BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05910.1 Length=456 Score E Sequences producing significant alignments: (Bits) Value Ahg940021 jgi|Araly1|940021|scaffold_600565.1 477 3e-134 > Ahg940021 jgi|Araly1|940021|scaffold_600565.1 Length=617 Score = 477 bits (258), Expect = 3e-134 Identities = 413/480 (86%), Gaps = 42/480 (9%) Strand=Plus/Plus Query 1 ATGCGATCTTTTCCGCCGTCACCA-GC-T--CCCGCAT-CTATCGAAAACAATACG---C 52 |||||||||||||||||||||||| | | ||||||| | ||||||||| ||||| | Sbjct 107 ATGCGATCTTTTCCGCCGTCACCATCCATCCCCCGCATAC-ATCGAAAACGATACGCATC 165 Query 53 ATCATCATCTACATGAAGACTTCACTCTTATGGTCATCGTCTTCGTTTTGTATGGCATTG 112 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 166 ATCATCATCTACATGAAGACTTCACTCTTATGATCATCGTCTTCGTTTTGTATGGCATTG 225 Query 113 TTGCCATAAGGTATGCAACCTTTAACGATGGTTGTCGTGGAACTAATCTTAGATTCCAGA 172 ||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| Sbjct 226 TTGCCATAAGGTATGTAACCTTTAATGATGGTTCTCGTGGAACTAATCTTAGCTTCCAGA 285 Query 173 GACCGCAACCACCTCTACCGTTACCACAACCTCAGCCGCCAATGTGTCCGCGGGAGATTG 232 ||| || | |||| |||| | |||||||||||||||||||| |||||| Sbjct 286 GACAGC-------T--ACCG---CCACTGC---AGCCGCCAATGTGTCCGCGGCAGATTG 330 Query 233 CGGCGATGATTAAAGACATAGTTGTGGACGTGGAATTATGTTGTCCGATATGTCTTGAGG 292 |||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 331 AGGCGATGATTAAGGACATAGTTGTTGACGTGGAATTGTGTTGTCCAATATGTCTTGAGG 390 Query 293 ATTTGAAGAAGGTTGAT-A--AT---G---------ATGATGATAAAGTCGTGGTTTGTT 337 ||||||||||||||||| | || | |||||||||||||||||||||||| Sbjct 391 ATTTGAAGAAGGTTGATGATGATAATGGCCGTGGCGATGATGATAAAGTCGTGGTTTGTT 450 Query 338 TATCCAAGTGCAATCATAGTTTCCACATGAATTGCATATTCTCTTGGCTTAGAGAAAGTC 397 ||||||||||| ||||||||||||||||||| ||||| || |||||||||||| |||||| Sbjct 451 TATCCAAGTGCCATCATAGTTTCCACATGAAGTGCATTTTTTCTTGGCTTAGACAAAGTC 510 Query 398 AGGATTGTCCCATCTGTCGTAGCACTGTTTA-CAGAGGTGGAGTTACATTGATCAAATAA 456 ||||||||||||| ||||||| | ||||||| | |||||| ||||||||||||||| ||| Sbjct 511 AGGATTGTCCCATTTGTCGTACCTCTGTTTATC-GAGGTGAAGTTACATTGATCAA-TAA 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16483214448 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5