BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05910.1
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940021 jgi|Araly1|940021|scaffold_600565.1 477 3e-134
> Ahg940021 jgi|Araly1|940021|scaffold_600565.1
Length=617
Score = 477 bits (258), Expect = 3e-134
Identities = 413/480 (86%), Gaps = 42/480 (9%)
Strand=Plus/Plus
Query 1 ATGCGATCTTTTCCGCCGTCACCA-GC-T--CCCGCAT-CTATCGAAAACAATACG---C 52
|||||||||||||||||||||||| | | ||||||| | ||||||||| ||||| |
Sbjct 107 ATGCGATCTTTTCCGCCGTCACCATCCATCCCCCGCATAC-ATCGAAAACGATACGCATC 165
Query 53 ATCATCATCTACATGAAGACTTCACTCTTATGGTCATCGTCTTCGTTTTGTATGGCATTG 112
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 166 ATCATCATCTACATGAAGACTTCACTCTTATGATCATCGTCTTCGTTTTGTATGGCATTG 225
Query 113 TTGCCATAAGGTATGCAACCTTTAACGATGGTTGTCGTGGAACTAATCTTAGATTCCAGA 172
||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct 226 TTGCCATAAGGTATGTAACCTTTAATGATGGTTCTCGTGGAACTAATCTTAGCTTCCAGA 285
Query 173 GACCGCAACCACCTCTACCGTTACCACAACCTCAGCCGCCAATGTGTCCGCGGGAGATTG 232
||| || | |||| |||| | |||||||||||||||||||| ||||||
Sbjct 286 GACAGC-------T--ACCG---CCACTGC---AGCCGCCAATGTGTCCGCGGCAGATTG 330
Query 233 CGGCGATGATTAAAGACATAGTTGTGGACGTGGAATTATGTTGTCCGATATGTCTTGAGG 292
|||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 331 AGGCGATGATTAAGGACATAGTTGTTGACGTGGAATTGTGTTGTCCAATATGTCTTGAGG 390
Query 293 ATTTGAAGAAGGTTGAT-A--AT---G---------ATGATGATAAAGTCGTGGTTTGTT 337
||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 391 ATTTGAAGAAGGTTGATGATGATAATGGCCGTGGCGATGATGATAAAGTCGTGGTTTGTT 450
Query 338 TATCCAAGTGCAATCATAGTTTCCACATGAATTGCATATTCTCTTGGCTTAGAGAAAGTC 397
||||||||||| ||||||||||||||||||| ||||| || |||||||||||| ||||||
Sbjct 451 TATCCAAGTGCCATCATAGTTTCCACATGAAGTGCATTTTTTCTTGGCTTAGACAAAGTC 510
Query 398 AGGATTGTCCCATCTGTCGTAGCACTGTTTA-CAGAGGTGGAGTTACATTGATCAAATAA 456
||||||||||||| ||||||| | ||||||| | |||||| ||||||||||||||| |||
Sbjct 511 AGGATTGTCCCATTTGTCGTACCTCTGTTTATC-GAGGTGAAGTTACATTGATCAA-TAA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16483214448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5