BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05920.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487392 jgi|Araly1|487392|fgenesh2_kg.6__526__AT5G05920.1 1784 0.0
> Ahg487392 jgi|Araly1|487392|fgenesh2_kg.6__526__AT5G05920.1
Length=1208
Score = 1784 bits (966), Expect = 0.0
Identities = 1153/1238 (93%), Gaps = 34/1238 (3%)
Strand=Plus/Plus
Query 1 ATTTGTCAGCAAAGATTCGTTTGAAGATAGTT-CATCTTTATTCC-TTCCCCTAGAACCC 58
|||||||||||||||||||||||||||| ||| |||||||||||| || |||| |
Sbjct 1 ATTTGTCAGCAAAGATTCGTTTGAAGATGGTTCCATCTTTATTCCGTT-TACTAG-A--- 55
Query 59 TAGAACTCCCAAAACCCTCTACTACTACACTTTCAGATCCAAGGAAATCAATTTTGTCAT 118
||||| || | || ||| || | || | | |||||||| ||||||||| | | |
Sbjct 56 -AGAAC-CCTAGAA--CTC-AC-AAAAC-CCTCCAGATCCAGGGAAATCAA---T-T--T 102
Query 119 TCGAGCAACATGGAGGATGATCGTGTTTTCTCTTCGGTTCACTCAACAGTTTTCAAAGAA 178
| | ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 T---G----ATGGA-G--GATCGTGTTTTCTCTTCGGTTCACTCAACAGTTTTCAAAGAA 152
Query 179 TCCGAATCATTGGAAGGAAAGTGTGATAAAATCGAAGGATACGATTTCAATCAAGGAGTA 238
|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 153 TCCGAATCGCTAGAAGGAAAGTGTGATAAAATCGAAGGATACGATTTCAATCAGGGAGT- 211
Query 239 G-ATTACCCAAAGCTTATGCGATCCATGCTCACCACCGGATTTCAAGCCTCGAATCTCGG 297
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 212 GAATTACCCAAAGCTTATGCGATCCATGCTCACCACTGGATTTCAAGCCTCTAATCTCGG 271
Query 298 CGAAGCTATTGATGTCGTCAATCAAATGCTAGATTGGAGACTGGCTGATGAAACTACAGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 272 CGAAGCTATTGATGTCGTCAATCAAATGCTAGATTGGAGACTGGCTGATGAAACTATAGT 331
Query 358 AGCTGAAGACTGTAGTGAAGAGGAG-AAGAATCCATCGTTTAGAGAGTCTGTCAAGTGTA 416
| ||||||||||||||| ||||||| ||| | ||||||| ||||||||||||||||||||
Sbjct 332 ATCTGAAGACTGTAGTGCAGAGGAGAAAG-ACCCATCGTATAGAGAGTCTGTCAAGTGTA 390
Query 417 AAATCTTTCTAGGTTTCACTTCAAATCTTGTTTCATCTGGTGTTAGAGATACTATTCGTT 476
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 391 AAATCTTTCTGGGTTTCACTTCCAATCTTGTTTCATCTGGTGTTAGAGATACTATTCGTT 450
Query 477 ATCTTGTTCAGCATCATATGGTTGATGTTATAGTCACGACAACTGGTGGTGTTGAGGAAG 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 451 ATCTTGTTCAGCATCATATGGTTGATGTTATAGTCACTACAACTGGTGGTGTTGAGGAAG 510
Query 537 ATCTCATAAAATGCCTTGCACCTACATTTAAAGGTGATTTCTCTCTACCTGGAGCTTATT 596
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATCTCATTAAATGCCTTGCACCTACATTTAAAGGTGATTTCTCTCTACCTGGAGCTTATC 570
Query 597 TAAGGTCAAAGGGATTGAACCGAATTGGGAATTTGCTGGTTCCTAATGATAACTACTGCA 656
|| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 571 TACGGTCAAAGGGATTGAACCGGATTGGGAACTTGCTCGTTCCTAATGATAACTACTGCA 630
Query 657 AGTTTGAGGATTGGATCATTCCCATCTTTGACGAGATGTTGAAGGAACAGAAAGAAGAGA 716
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 631 AGTTTGAGGATTGGATCATTCCTATATTTGATGAGATGTTGAAGGAACAGAAAGAAGAGA 690
Query 717 ATGTGTTGTGGACTCCTTCTAAACTGTTAGCACGGCTGGGAAAAGAAATCAACAATGAGA 776
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 ATGTGTTGTGGACACCTTCTAAACTGTTAGCACGGCTGGGAAAAGAAATCAACAATGAGA 750
Query 777 GTTCATACCTTTATTGGGCATACAAGATGAATATTCCAGTATTCTGCCCAGGGTTAACAG 836
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 751 GTTCATACCTTTATTGGGCTTACAAGATGAATATTCCAGTATTCTGCCCGGGGTTAACAG 810
Query 837 ATGGCTCTCTTGGGGATATGCTGTATTTTCACTCTTTTCGTACCTCTGGCCTCATCATCG 896
|||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 811 ATGGCTCTCTCGGAGATATGCTGTATTTTCACTCCTTTCGTACCTCTGGCCTTATCATCG 870
Query 897 ATGTAGTACAAGATATCAGAGCTATGAACGGCGAAGCTGTCCATGCAAATCCTAAAAAGA 956
||||||| ||||||||||||||||||||||| |||||||| ||||||| ||| | |||||
Sbjct 871 ATGTAGTGCAAGATATCAGAGCTATGAACGGTGAAGCTGTTCATGCAACTCCGAGAAAGA 930
Query 957 CAGGGATGATAATCCTTGGAGGGGGCTTGCCAAAGCACCACATATGTAATGCCAATATGA 1016
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 931 CAGGGATGATAATCCTTGGAGGGGGCTTGCCGAAGCACCACATATGTAATGCCAATATGA 990
Query 1017 TGCGCAATGGTGCAGATTACGCTGTATTTATAAACACCGGGCAAGAATTTGATGGGAGCG 1076
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 991 TGCGTAATGGAGCAGATTACGCTGTATTCATAAACACCGGGCAAGAATTTGATGGGAGCG 1050
Query 1077 ACTCGGGTGCACGCCCTGATGAAGCCGTGTCTTGGGGTAAAATTAGGGGTTCTGCTAAAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 ACTCGGGTGCACGCCCTGATGAAGCCGTGTCTTGGGGTAAAATTAGGGGTTCTGCTAAAA 1110
Query 1137 CCGTTAAGGTATACTGTGATGCTACCATAGCCTTCCCATTGTTGGTTGCAGAAACATTTG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCGTTAAGGTATACTGTGATGCTACCATAGCCTTCCCATTGTTGGTTGCAGAAACATTTG 1170
Query 1197 CCACAAAGAGAGACCAAACCTGTGAGTCTAAGACTTAA 1234
|||||||||||||||||||||||||||||||||| |||
Sbjct 1171 CCACAAAGAGAGACCAAACCTGTGAGTCTAAGACATAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5