BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05930.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487393 jgi|Araly1|487393|fgenesh2_kg.6__527__AT5G05930.1 1746 0.0
> Ahg487393 jgi|Araly1|487393|fgenesh2_kg.6__527__AT5G05930.1
Length=1378
Score = 1746 bits (945), Expect = 0.0
Identities = 1199/1314 (91%), Gaps = 47/1314 (4%)
Strand=Plus/Plus
Query 1 TGAAGGATGAATaagaagaagacaag--aataagaagaagaagaagaaaagaTTGAAATT 58
|||||||||||||||||| | ||||| || || || |||||||||||||||||||||||
Sbjct 1 TGAAGGATGAATAAGAAG-A-ACAAGACAACAATAACAAGAAGAAGAAAAGATTGAAATT 58
Query 59 AGAATAATCTCAGGATTCGTCGCTATCCCAAGAGCaaaaa-aaCAAATGAAAACACGAGA 117
|||| |||||||||||||||||||||||||||| |||||| ||| || ||||||||| |
Sbjct 59 AGAACAATCTCAGGATTCGTCGCTATCCCAAGACCAAAAACAAC-AA--AAAACACGAAA 115
Query 118 AACGTGAAGATACAGCTCC-CGTCTCCTTTATCCAAATTCCAAACCTTTTTCATTTTCCC 176
||||||||||||||| ||| |||||||||||||| | |||||||||| |||| |||
Sbjct 116 AACGTGAAGATACAGGTCCTCGTCTCCTTTATCC--A----AAACCTTTTTGATTTCCCC 169
Query 177 AGGAAAATTGAGTAGTAATTAGAAAACTCATCGTC--CT-CATT-GAG-CTGC-AGATCC 230
|| |||||| | ||| | | ||||||| || || || || || | | || ||
Sbjct 170 AGAAAAATT--G-AGT-A--ACAAAACTCTTCTTCATCTGGGTTAAAGCCAACAAGCTCT 223
Query 231 CATAATC-TCTCTCGC-CAATCATCTCCCTTGCATCTTAATCAAAGGTGTATTATATCCG 288
| ||||| |||||||| | | |||| |||||||||||| ||||||| |||| |||||
Sbjct 224 C-TAATCATCTCTCGCTCGCT-GTCTCTCTTGCATCTTAAGCAAAGGTATATTCTATCCA 281
Query 289 C-AACAAGATCATTAGAGAAGGCTGTTACAAGTTTGTTTTATGACCGCGTAACAGCTCAC 347
| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 282 CAAAC-AGATCATTAGAGAAGGCTGTTACAAGTGTGTTTTATGACCACGTAACAGCGCAC 340
Query 348 TTGGTAA-TTGATGTGGCCTCTTTGTTTTCTGCTTAACAAGCTATTAAGAGTTGAGGAGA 406
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 341 TTGGTAATTTGATGTGGCCTCTTTGTTTTCTACTTAACAAGCTATTAAGAGTTGAAGAGA 400
Query 407 GGAATCAGGGGATATTAGACGGAAATGGAGATTCGACTTTTCCGAAATACTGCCTATTCG 466
|||||||||||| | |||| ||| ||||||||||||||| |||||||||||||| |||||
Sbjct 401 GGAATCAGGGGAGACTAGAAGGACATGGAGATTCGACTTCTCCGAAATACTGCCAATTCG 460
Query 467 ATGATCCCTTGGTGAGTGATGGAAAGTA-CAGAGATGCAGGGTTGCCATCCTCGTCCCAC 525
||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 461 ATGATCCGTTGGTGAGTGATGGAAAGTATC-GAGATGCAGGGTTGCCATCCTCGTCCCAC 519
Query 526 ATGGATGTCCCTCATGTACATCAGTTAGCTTCATGGGATTGCGGTCTCGCTTGTGTTCTT 585
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATTGAGGTCCCTCATGTACATCAGTTAGCTTCATGGGATTGCGGTCTCGCTTGTGTTCTT 579
Query 586 ATGGTTCTCAGAGCAAGTGGCATCGCAAGCTGCACTCTTGAGGATTTGGCTGAGATATGC 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 580 ATGGTTCTCAGAGCAAGTGGCATCGCAAGCTGCACTCTTGAGGATTTGGCTGAGATTTGC 639
Query 646 TCCACAAATAGCATTTGGACTGTCGATCTCGCATATTTACTGCAGAAGTTCTGTGTGGAA 705
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 640 TCCACAAATAGCATTTGGACTGTAGATCTCGCATATTTACTGCAGAAGTTCTGTGTGGAA 699
Query 706 TTTTCATATTACACGATAACATTTGGAGCAAACCCGAATTATTCCATAGAGGAATTTTAC 765
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 700 TTTTCCTATTACACGATAACATTTGGAGCAAACCCGAATTATTCCATTGAGGAGTTTTAC 759
Query 766 AAGGAGCAGCTCCCTGAAGATCTGGTGCGTGTCGATTTGCTCTTCAGGAAAGCACATGAA 825
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 760 AAGGAGCAGCTCCCTGAAGATCTGGTGCGTGTGGATTTGCTCTTCAGGAAAGCACATGAA 819
Query 826 TCTGGCATTATTATACAGTGCAGATCAGTTAGTATCCATGAGATTTCTTGTTTGCTATTG 885
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 820 TCTGGCATTATTATACAGTGCAGATCAGTTAGTATCCATGAGATATCTTGTTTGCTATTG 879
Query 886 TCGGGGAACTATATTGCCATTGCGTTAGTCGACCAGGACAAGCTAAGCAAGTCTTGGTTG 945
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TCCGGGAACTATATTGCCATTGCGTTAGTCGACCAGGACAAGCTAAGCAAGTCTTGGTTG 939
Query 946 GAGGAAGTGCTTGTCTCTGGTCTTCACTCCAGCAATTCTTGTTACACTGGTCACTATGTC 1005
||||||||| ||||| ||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 940 GAGGAAGTGATTGTCGCTGGTCTTCACTCCAGCAACTCCTGCTACACTGGTCACTATATC 999
Query 1006 GTGATATGTGGCTATGATGCTGTTAGGGATGAGTTCGAGATCAGAGATCCCGCCAGTTCC 1065
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1000 GTGATATGTGGCTATGATGCTGTTAGAGATGAGTTCGAGATCAGAGATCCCGCCAGTTCC 1059
Query 1066 AAGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACA 1125
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| |||
Sbjct 1060 AAGATACATGAGAGGATATCATCAAAATGCCTGGAGAATGCCCGGAAATCGTATGGTACA 1119
Query 1126 GACGAAGATCTTCTCCTGATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAAT 1185
|| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1120 GATGAAGATCTTCTCCTGATAAATTTGGAGAATATAAGGAACCAGAAGGGATATTAGAAT 1179
Query 1186 AGTTGTCATCATCATCATCAAATCAGTTCTGGATGAGAATGAAACCTG-AGTGTTTTCTC 1244
||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||
Sbjct 1180 AGTTGTCATCATCATCATCAAATGAATTCTGGATCAGAATGAAACCTGGAGTGTTTTCTC 1239
Query 1245 CCAGAAGAACATGAGGTGAAAAGTATACGTCTCTATACATACGTCTTTACATAT 1298
||| || | | | |||||||||||||||| ||||||||||||||||||||
Sbjct 1240 CCA-AA-A----G-G-TGAAAAGTATACGTCT--ATACATACGTCTTTACATAT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5