BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05940.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325218 jgi|Araly1|325218|fgenesh1_pm.C_scaffold_6000438 2848 0.0
> Ahg325218 jgi|Araly1|325218|fgenesh1_pm.C_scaffold_6000438
Length=1830
Score = 2848 bits (1542), Expect = 0.0
Identities = 1748/1845 (95%), Gaps = 24/1845 (1%)
Strand=Plus/Plus
Query 102 ATGGAGAATTTAGTGAAGAGCTGCGCAGGGATCGAGAAGAAAAGAAGCAATTTGACTCCA 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGAGAATTTAGTGAAGAGCTGCGCAGGGATCGAGAAGAAAAGAAGCAATTTGACT-CA 59
Query 162 -TC-GATGGAAGATATACTTACAGAGTCAAAGGAGAGAAGCAGCACTAGCGGAGCGAGCT 219
|| || ||||||||| | |||||||||||||||||||||||||| |||| | | ||||
Sbjct 60 TTCGGA-GGAAGATATGGTAACAGAGTCAAAGGAGAGAAGCAGCACGAGCGAATCTAGCT 118
Query 220 ACGAAAGCTCCTCCACCACCACCGTCGCTTCGTCTTCTCCACCACCACCACCGTCGCAGA 279
|||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 ACGAGGGTTCCTCCGGCACCACCGTCGCTTCGTCTTCTCCACCACCACAACCGTCGCAGA 178
Query 280 TTCTGGGTTGGCCGATTAGAAAAGCTTCATTTCGGAAAAATTCGAAGGAGAGTGTTAATT 339
|||||||||||||||| ||||||||||||||||| || ||||| ||||||| ||||||||
Sbjct 179 TTCTGGGTTGGCCGATCAGAAAAGCTTCATTTCGTAAGAATTCCAAGGAGAATGTTAATT 238
Query 340 TTGATCATAAGAAAT-TAACCCTTCACGATGATTCTGGGTTTAAAGCG-AAAGAGATGAA 397
| ||||||||||||| | |||||||||||||||||||||||| ||| | |||||||||||
Sbjct 239 TGGATCATAAGAAATCT-ACCCTTCACGATGATTCTGGGTTTCAAG-GAAAAGAGATGAA 296
Query 398 TTCTGCAGATGTGGAGATGATGAAGGAGAGATTTGCAAAGTTGTTACTTGGTGAAGATAT 457
|| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 TTTTGCAGACGTGGATATGATGAAGGAGAGATTTGCAAAGTTGTTGCTTGGTGAAGATAT 356
Query 458 GTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCT 517
||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 357 GTCAGGTTCTGGTAAAGGTGTGTGTACAGCTTTAGCCATCTCCAACGCCATCACCAATCT 416
Query 518 CTGTGCTACGATTTTCGGGCAACTATGGAGATTAGAGCCACTTTCAAGCGAAAAGAAGGA 577
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 CTGTGCTACGATTTTTGGGCAACTATGGAGATTAGAGCCACTTTCAAGTGAAAAGAAGGA 476
Query 578 GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAAC 637
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTTGAGTTAAC 536
Query 638 ACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGGTCATGACTTGTCGACCAAG 697
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACCTTCAACGCAAACTTATCCAGACGGCAACAAGTTTGAGGTCATGACTTGTCGACCAAG 596
Query 698 ATTTGATCTTTTCATCAACCTCCCTGCTCTCCGTAAACTAGACAATATGCTTCTCGATAT 757
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 597 ATTTGATCTTTTCATCAATCTCCCGGCTCTTCGTAAACTAGACAATATGCTTCTCGATAT 656
Query 758 ATTGGCGAGTTTCAAGAAAACTGAGTTCTGGTATGTTGATCAAGGGATCGTTGCTTCGGA 817
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 657 ATTGGCGAGTTTCAAGAAAACCGAGTTCTGGTATGTTGATCAAGGGATTGTTGCTTCGGA 716
Query 818 AAACGATGGCTCAGCTTCTTTCCGCAGAAAGATTCAGCGCCAAGAGGAGAAATGGTGGTT 877
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 717 AAACGATGGCTCAGCTTCTTTCCGCAGAAAGATTCAGCGTCAAGAGGAGAAGTGGTGGTT 776
Query 878 GCCTGTTCCTCGTTTAGCACCGAATGGTCTTACTGAAGAAGCAAGAACAGAATTGAATCA 937
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCTGTTCCCCGTTTAGCACCTAATGGTCTTACTGAAGAAGCAAGAACAGAATTGAATCA 836
Query 938 TAAGAGGGAATGTGCGACGCAGATACTTAAAGCTGCAATGGCTATTAACAGCCTTGCTTT 997
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 CAAGAGGGAATGTGCGACGCAGATACTTAAAGCTGCAATGGCCATTAACAGCCTTGCTTT 896
Query 998 AACCGAAATGGATGTTCCT-AAATCATACCTTGAAACCCTTCCAAAGAACGGTAGGTCCT 1056
||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 897 AACCGAAATGGATGTTCCTGAAA-CATACCTTGAAACTCTTCCAAAGAATGGTAGGTCCT 955
Query 1057 GCCTTGGGGATGTTATCTACAGGTATGTAACATCTGACAAATTTTCTGCGGAGTCTCTTC 1116
||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 956 GCCTTGGGGATGTTATCTACAGGTACATAACATCTGATAAATTTTCTGCGGAGTGTCTTC 1015
Query 1117 TCGATTGCCTTGATCTGTCCTCTGAGCATATTGCTCTTGATATCGCAAACCGTGTGGAAG 1176
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1016 TCGATTGCCTTGATCTGTCCTCTGAGCATATTGCTCTTGATATTGCAAACCGTGTGGAAG 1075
Query 1177 CTTCGATATATGTTTGGAGGAGAAGAGTTCAAACAAAACTTGGAGT---CAACAATAATA 1233
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1076 CTTCGATATATGTTTGGCGGAGAAGAGTTCAAACAAAACTTGGAGTCAACAACAATAATA 1135
Query 1234 CTTCAAGCACTACTCCAAAGTTAACATGGGAAATGGTCAAAGAACTAATGGCTGCTGGTG 1293
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 CTTCAAGCACTACTCCAAAGTTAACATGGGAAATGGTCAAAGAGCTAATGGCTGCTGGTG 1195
Query 1294 ACAAAAGGGGATTGCTTGTGGAGAGATCGGAAACTCTCTTACGTTGCTTGAAGCAGCGGT 1353
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1196 ACAAAAGGGGATTGCTTGTGGAGAGATCCGAAACTCTCTTACGTTGCTTGAAGCAGCGGT 1255
Query 1354 TTCCTTCTCTAACGCAGACTTCTCTAGACATAAGCAAGATTCAATGGAACAAGGATATTG 1413
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1256 TTCCATCTCTAACGCAGACTTCTCTAGACATTAGCAAGATTCAATGGAACAAGGATATTG 1315
Query 1414 GGAAATCAATCCTCGAAAGCTACTCAAGGGCTTTGGAGAGCTTAGCATCAAACATCATAG 1473
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1316 GGAAATCAATCCTCGAAAGCTACTCAAGGGCGTTGGAGAGCTTAGCATCAAACATCATTG 1375
Query 1474 CACGAATCGATGATTTACTCTACGTGGACGACTTAACAAAGCAATCAGATGATAACAATC 1533
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1376 CACGAATCGACGATTTACTCTACGTGGACGACTTAACAAAGCGATCAGATGATAACATTC 1435
Query 1534 TTTTGTCAAGTCCAGCGGTCAGCAGCATTATAGCTCACAAGAAAGTAGTACCACTCCCTT 1593
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGTTGTCAAGTCCAGCGGTCTGCAGCATTATAGCTCACAAGAAAGTAGTACCACTCCCTT 1495
Query 1594 ATCTAATATCTGCATCAGGAACTCCATATAGAACAAGCTTCTCAACAACACCAGGCTTCT 1653
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1496 ATCTAATATCTGCATCAGGAACTCCATACAGAACAAGCTTCTCAACAACACCAGGCTTCT 1555
Query 1654 CTCCTTCAATGATTAGCCCCAAGAAAGGAGAGAGGAGAACACCTTACTCCAGCA-AGGAC 1712
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 1556 CTCCTTCAATGATTAGCCCCAAGAAAGGAGAGAGGAGGACACCTTACTCCAGCAGAG-AC 1614
Query 1713 ACTAACAAAATCATTGAGAAAGGTCTTCCTTCTCGAGGATATGGAGTGAGAAGAGTCTTG 1772
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1615 ACTAACAAAATCATTGAGAAAGGTCTTCCTTCTCGAGGATTTGGAGTGAGAAGAGTCTTG 1674
Query 1773 AACAATTATCTTGGCATGGAATCAAAACTGAAAATATGCGTTAATCCGTCAGATAATGCA 1832
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1675 AACAATTATCTTGGCATGGAATCGAAACTGAAAATATGCGTGAATCCGTCAGATAATGCA 1734
Query 1833 GATACAGCAGTGATTAACCAAATCAGCAAAGACGTGGAAGAAGAGAAGAAAAGAAACTCA 1892
|||||||| |||||| | ||| | || | ||||| ||||||||||||||||| |||
Sbjct 1735 GATACAGCTGTGATTTGC-AAA---G-AA-G--GTGGA-GAAGAGAAGAAAAGAAATTCA 1785
Query 1893 ACATCAGTCCATCAAAAGGGTCCTCCAAAGTACACTGTCTCTTAA 1937
| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1786 ATATCAGTCCATCAAAAGGGTCCTCCAAAGTACACAGTCTCTTAA 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5