BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05950.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487395 jgi|Araly1|487395|fgenesh2_kg.6__529__AT5G05950.1 1085 0.0
> Ahg487395 jgi|Araly1|487395|fgenesh2_kg.6__529__AT5G05950.1
Length=660
Score = 1085 bits (587), Expect = 0.0
Identities = 639/663 (96%), Gaps = 7/663 (1%)
Strand=Plus/Plus
Query 14 TCTCTCTGATTGGCCGGATCTGCCGGAGAGAAAAATGACGACGAGTATTCACATCACAGC 73
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTGATTCGCGGGATCTGCCGGAGAG-AAAATGACGACGAGTATTCACATCACAGC 59
Query 74 TCTCGACGGAATCGTCAACGTGAACTCACTCTTCACACTCGCCGTATTCATCGGATTAGC 133
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TCTCGACGGAATCGTCAACGTGAACTCTCTCTTCACACTCGCCGTATTCATCGGATTAGC 119
Query 134 TTGGAACCCTACCGATCCAGACAACAGCCTCGTAACCGACCCTAATTGCGTCCCCACAGC 193
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TTGGAACCCTACCGATCCAGACAACAGCCTCGTAACCGACCCTAATTGTGTCCCCACAGC 179
Query 194 TCGTATGGCTGAGAATCTCGTCGCCTTCCATGTGTACTCTTTCGCATCATTCCTATTCTC 253
||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 180 TCGTATGGCGGAGAATCTCGTCGCCTTCCATGTCTACTCTTTCGCTTCGTTCCTATTCTC 239
Query 254 AAGTCTCATCGCTCTAGGTCTCAAACAAGCAATGAGGCTCAACATAGCTTCTTCGTTTCA 313
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 AAGTCTCATCGCTCTAGGTCTCAAACAAGCCATGAGGCTCAACATAGCTTCTTCGTTTCA 299
Query 314 CATCTCTACTCGAATCGATCCTGTGGTTTACTATGTGAACAAGACGGCTCTTAGATTTGG 373
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 300 CATCTCTACTCGAATCGATCCTGTGGTGTACTATGTGAACAAGACTGCTCTTAGATTTGG 359
Query 374 GATGGTTA-CATCCGGTTTGGGATCGGTTTGTGGATGTGGGTTTCTCATGTTGGCTTTGA 432
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATGGTTATC-TCCGGTTTGGGATCGGTTTGTGGATGTGGGTTTCTCATGTTGGCTTTGA 418
Query 433 TTAATGTTGTTCAGATCAAGCTTGGGACTTTGGGCTGTGGTGCTAGTGGTCATACTTATG 492
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTAATGTTGTTCAGATCAAGCTTGGGACTTTGGGTTGTGGTGCTAGTGGTCATACTTATG 478
Query 493 CAGCTGTTGTGCCGCTTGTGATTCTGGTTCCTTCTGCACTTTTCATCTATGTTTCTCTTA 552
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 CAGCTGTTGTGCCGCTTGTGATTCTGGTTCCTTCTGCACTTTTTATCTATGTTTCTCTTA 538
Query 553 TGTTATATGCTTTTACTCGTTAGAGACATGGTTTTTGATTCCATGGTTGATGCAATTAGG 612
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 539 TGCTATATGCTTTTACTCGTTAGAGACATGGTTTT-GATTCCATGATTGATGCAATTAGG 597
Query 613 GTTATGTTTGTATGATGATGATAT--GATGG-AAATGAGAATGATTCTATGTTTGATATG 669
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 598 ATTATGTTTGTATGATGATGATATATGATGGGAAATGAGAATGATTCTATGCTTGATATG 657
Query 670 GTT 672
|||
Sbjct 658 GTT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5