BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G05960.1

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487396 jgi|Araly1|487396|fgenesh2_kg.6__530__AT5G05960.1          649    0.0  


> Ahg487396 jgi|Araly1|487396|fgenesh2_kg.6__530__AT5G05960.1
Length=494

 Score =  649 bits (351),  Expect = 0.0
 Identities = 403/429 (94%), Gaps = 0/429 (0%)
 Strand=Plus/Plus

Query  1    ATATGCATCAACTCATCACTCAAGAATGGAAACCCATGTTTTATCTCGCATTTTCCTCCT  60
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATATGCATCAAGTCATCTCTCAAGAATGGAAACCCATGTTTTATCTCGCATTTTCCTCCT  60

Query  61   AGTTCTCTGCATCTACAGCCTTAAAACCATGGTTTATGGGGCTGGAGAATGTGGGAGAAA  120
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  61   AGTTCTCTGCATCTACAGCCTTAAAACCATGGTTGATGGGGCTGGAGAATGTGGGCGAAA  120

Query  121  TCCTCCAGACAGAGAAGCCATAAAGTTGGCTCCTTGTGCAATGGCTGCACAAGACACATC  180
            ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  121  TCCCCCAGATAGAGAAGCCATAAAGCTGGCTCCTTGTGCAATGGCTGCACAAGACACATC  180

Query  181  TGCTAAAGTGTCAGCAATTTGCTGTGCTCGAGTGAAACAGATGGGGCAGAATCCAAAATG  240
            ||||| ||||||  ||| ||||||||||||||||||||||||||| ||||| || |||||
Sbjct  181  TGCTAGAGTGTCTCCAACTTGCTGTGCTCGAGTGAAACAGATGGGACAGAACCCGAAATG  240

Query  241  CCTTTGTGCTGTCATGCTTTCTTCCACAGCTAGGAGCTCCGGAGCAAAGCCAGAGATCTC  300
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  241  CCTTTGTGCAGTCATGCTTTCTTCCACAGCTAGGAGCTCTGGAGCAAAGCCAGAGATCTC  300

Query  301  GATGACTATTCCTAAACGCTGCAACATCGCTAATCGTCCCGTCGGTTACAAATGTGGAGC  360
             ||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct  301  AATGACCATTCCTAAACGCTGCAACATCGCTAATCGTCCCATTGGTTACAAGTGTGGAGC  360

Query  361  TTATACTCTGCCTTGAAGCAGCAGACAGAAAGCAATAGACGTGTTCTTCAAAACCAGTCT  420
            ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct  361  TTATACTCTGCCTTGAAGCAGCAGACAGAGAGCAATGGACGTGTTCGTCAAAACCAGTCT  420

Query  421  AAATTGTCA  429
             |||| |||
Sbjct  421  TAATTATCA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18734394199


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5