BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G05965.1

Length=806
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892520 jgi|Araly1|892520|Al_scaffold_0006_516                     529    1e-149


> Ahg892520 jgi|Araly1|892520|Al_scaffold_0006_516
Length=405

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 373/411 (91%), Gaps = 21/411 (5%)
 Strand=Plus/Plus

Query  140  ATGGACATCAAGAAAACCAAAGCTGCTTCATCATCGCATTCTTCTTCATTTGATAATCTG  199
            |||||||||||||||||||||||||| |  || |  | ||||||||||||||||||||||
Sbjct  1    ATGGACATCAAGAAAACCAAAGCTGC-T--TCGT--C-TTCTTCTTCATTTGATAATCTG  54

Query  200  TTTGGTCCGAAAGGATCA------G---CATCTGCTTCTTCTTGTTCAACTATACTCGAC  250
            |||||||| |||||||||      |   ||||||||||||||||||||||||||||||||
Sbjct  55   TTTGGTCCTAAAGGATCAGCCTCTGCTTCATCTGCTTCTTCTTGTTCAACTATACTCGAC  114

Query  251  TCCATTTTTCCTCCTCCGGTAGCAAGGAAGAAGGGCAGTCACACTGCTCCTGAAGTTCAA  310
            |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  115  TCCATTTTCCCTCCCCCGGTAGCAAGGAAGAAGGGAAGTCACACTGCTCCTGAAGTTCAA  174

Query  311  GGCAACATCTCTCAAGCCACTGAT---GA-GAG-GA-GCAGCCATGAAAAGAGAGAATCC  364
            |||| |||| ||| |||||||| |   || ||| || |||||||||||||||||||||| 
Sbjct  175  GGCAGCATCACTCTAGCCACTGCTAAAGATGAGAGAAGCAGCCATGAAAAGAGAGAATCA  234

Query  365  TCCTACTATAGCTCATCCATTTACTACGGAGGCCAGCAACACTATTCACCTCCACGAACC  424
            ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  235  TCCTATTATAGCTCATCCATTTACTACGGAGGCCAGCAACATTATTCACCTCCACGAACC  294

Query  425  GATGGTTCCTCCACTTCTCCATCTCATCAGCCCAAAGAAACCAATGATCGCACTGACATA  484
            ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
Sbjct  295  GATGGCTCCTCCACTTCTCCATTTCATCAGCCCAAAGAAACCGATGATCGCACTGACACA  354

Query  485  ACCACCTCTACTTCAAGAGGAAATTGGTGGAAAGGTTCTTTGTATTACTAA  535
            |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  355  ACCACCTCTACTTCCAGAGGAAATTGGTGGAAAGGTTCTTTGTATTACTAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29773998177


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5