BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05970.2
Length=2733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487399 jgi|Araly1|487399|fgenesh2_kg.6__533__AT5G05970.1 4353 0.0
> Ahg487399 jgi|Araly1|487399|fgenesh2_kg.6__533__AT5G05970.1
Length=2713
Score = 4353 bits (2357), Expect = 0.0
Identities = 2605/2723 (96%), Gaps = 23/2723 (1%)
Strand=Plus/Plus
Query 23 AATCTCATAGGGTTCAAAATTTGGTTTCTGCTGTTCTCTCGAGAAAAAAGTACAGTTCCC 82
|||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||
Sbjct 1 AATCTCATAGGGTTCAAAATTTTGTTTCTGCTGTTCTCTCGAG-GAAAGGTAGAGTTCCC 59
Query 83 GCATTGTTCAGATTCTCTA-AGATTCATTCATCAATCTGACTTTTCCCGGGAAAATTCAC 141
||||||| | ||||||| | |||||||||||| ||||||| ||||| |||||||||| ||
Sbjct 60 GCATTGTCCGGATTCTC-AGAGATTCATTCATTAATCTGAGTTTTCTCGGGAAAATTTAC 118
Query 142 TGTCTCTGAGTCCAAACCCGAATCCAGCGATGATGTCGAACTTGGTAGAGCCATCGTGGC 201
|| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 119 TGACTCTGAGT-CTAACCCGAATCCAGCGATGATGTCGAACTTGGTGGAGCCTTCGTGGC 177
Query 202 GCCTTCTGGCAGCGAGCGGCGGAGATACGGTTAAGCTTTTCGACGTTTCTGCCGATTCCG 261
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCCTTCTGGCAGCCAGCGGCGGAGATACGGTTAAGCTTTTCGACGTTTCTGCCGATTCCG 237
Query 262 GCGATCCCTGCGTTTTGAGCTATACTCCGTCACCTGGTTGTGCTGTCAACTCCGTCAAGT 321
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 GCGATCCCTGCGTTTTGAGCTATACTCCGACACCTGGTTGTGCTGTCAACTCCGTCAAGT 297
Query 322 GGAATCATACGAATTTAGTGGTGGCCAGTACGGGAGAAGATAAGAAGATATCCCTGTGGC 381
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 GGAATCATACGAATTTAGTCGTGGCGAGTACGGGAGAAGATAAGAAGATATCCCTGTGGC 357
Query 382 GGAAAAATGGGCAGAGTTTAGGAACAGTTCCAGTTACTGGGAAGGACGGTGGTGATAGTG 441
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 358 GGAAAAATGGGCAGAGTTTAGGAACAGTTCCAGTTACTGGCAAGGACGGTGGTGATAATG 417
Query 442 CTGAGGAATGTTTATCGGCTATTAGCTTCAGCAAAAAAGGCTCCAGGTACATTTGTTCTG 501
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 CTGAGGAATGTTTATCGGCTATTAGCTTCAGCAAAAAAGGGTCCAGGTACATTTGTTCTG 477
Query 502 GAGGAACTGGTCAAATTGTTAAGATATGGGATCTGCAAAGAAAGCTTTGTATTAAGAAGT 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAGGAACTGGTCAAATTGTTAAGATATGGGATCTGCAAAGAAAGCTTTGTATTAAGAAGT 537
Query 562 TGAAAGGTCATACAAGTACAATAACGGGTGTGATGTACAATTGCAAAGATGAGCATTTGG 621
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 TGAAGGGTCATACAAGTACAATAACGGGTGTCATGTACAATTGCAAAGATGAGCATTTGG 597
Query 622 CTTCTGTTAGTGTTGGTGGGGATCTAATAGTCCATAACCTTGCATCTGGAGCAAGGGCTA 681
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 598 CTTCTGTTAGTGTTGGTGGGGATCTGATAGTCCACAACCTTGCATCTGGAGCAAGGGCTA 657
Query 682 CCGAACTCAAAGATCCAAATGGGCAGGTATTAAGGTTGCTTGATTATTCAAGGTCTAGTC 741
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 CAGAACTCAAAGATCCAAATGGGCAGGTATTAAGGTTGCTTGATTATTCAAGGTCCAGTC 717
Query 742 GACACCTCCTAGTTACTGCAGGTGATGATGGCACTGTACATCTGTGGGACACAACTGGTC 801
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 GACACCTCCTACTCACTGCAGGTGATGATGGCACTGTGCATCTGTGGGACACAACTGGTC 777
Query 802 GTAGCCCGAAGATGTCCTGGTTGAAGCAGCATTCGGCACCAACTGCTGGTGTTTGCTTCT 861
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 GTAGCCCCAAGATGTCCTGGTTGAAGCAGCATTCGGCACCAACTGCTGGCGTTTGCTTCT 837
Query 862 CTCCATCAAACGAAAAGATAATTGCTAGTGTCGGGATGGACAAAAAGCTTTACACTTATG 921
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 838 CTCCATCAAACGAAAAGATAATTGCTAGTGTGGGGATGGACAAAAAGCTTTACACTTATG 897
Query 922 ATTCTGGATCCAGAAGATCTTCGTCCTGCATTGCCTATGAGGCACCTTTCTCCTCTTTGG 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATTCTGGATCCAGAAGATCTTCGTCCTGCATTGCCTATGAGGCACCTTTCTCCTCTTTGG 957
Query 982 CGTTTGGGGATAATGGCTATATTCTGGTAGCTGGAACCAGTAACGGTAGAGTAGTGTTTT 1041
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 958 CGTTTGGGGATAATGGTTATATTCTGGCAGCTGGAACCAGTAATGGTAGAGTAGTGTTTT 1017
Query 1042 ACGACATCCGTGGAAAACCGCAGCCTGTTACTGTCCTGCACGCTTTCAGTAATTCAGAGG 1101
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACGACGTCCGTGGAAAACCGCAGCCTGTTACTGTCCTGCACGCTTTCAGTAATTCAGAGG 1077
Query 1102 ATGTAACAAGT-TTATCATGGCAAACATCAAAACCAGTTATTGTGAATGAGAAAAATTAC 1160
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATGTAACAAGTCTT-TCATGGCAAACATCAAAACCAGTTATTGTGAATGAGAAAAATTAC 1136
Query 1161 ACTTCTGAGATGGCTCTTCTTGGCAGTACTGTGGAAGATTCAGTTGTCATTCCAGATCCA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1137 ACTTCTGAGATGGCTCTTCTTGGCAGTACTGTGGAAGATTCAGTTGTCATTCCGGATCCA 1196
Query 1221 CTTCCCTCAACGACACCCTCAGCTTCACAGTCCGCTATGGCACCAGGTTCCCGTGGAGTA 1280
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 CTTCCCTCAACGACACCCTCAGCTTCACAGTCCGCTTTGGCACCAGGTTCCCGTGGAGTT 1256
Query 1281 TCCGCGAGTACTGTAAATGCATCATCAGTTGAACAAACACCAAATAGAAATCATCTATGG 1340
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1257 TCCGCGAGTACTGTAAATGCATCATCAGTTGAACAAACACCAAATAGAACTCATCTATGG 1316
Query 1341 CCTAGTGGGCCACTGGGCAGACTGCATGCACTTCGTGCAAATGACAGTTATAATGATGAT 1400
||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1317 CCTGGTGGGCCACTGGGCAGACTGCATGCACTTCGTGCAAGTGACAGTTTTAATGATGAT 1376
Query 1401 ATGGGTGTTTTTTCACCTATTATTGACGTATCATCTGTTGAGAAGTGGGCTGATAGTGAA 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATGGGTGTTTTTTCACCTATTATTGACGTATCATCTGTTGAGAAGTGGGCTGATAGTGAA 1436
Query 1461 GGATAT-AATAATAAGGACCATTTAGTTGTTGACAACAAGCCGTCCTCTTTGCTATTTCC 1519
|||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1437 GGAT-TCAATAATAAGGACCATTTCGTTGTTGACAAAAAGCCGTCCTCTTTGCTATTTCC 1495
Query 1520 GTCATCCAGCAAGGGATATTCGTTTGGAGACAATGGAAGCAAGGAACATCCAATATTCGA 1579
||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||
Sbjct 1496 TTCATCCAGCAAGGGATATTCGTTCGGAGACGATGGAAACAAGGAACATCCGATATTCGA 1555
Query 1580 TTGGAAACCAAGCTCTACTTCGAAACAGGATGACCCGAGGGCTGCTTTTTCGTCTTTTGG 1639
||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1556 CTGGAAACCAAGTTCTACTTCGAAACAGGATGACACGAGGGTTGCTTTTTCGTCTTTTGG 1615
Query 1640 ATCTATTACGCCAACAGCATCATCCAAAAGTGAAGACTCTGCCTTGACACCTCCAGAAGC 1699
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1616 ATCTACTACGCCAACAGCATCATCCAAAAGTGAAGACACTGCCTTGACACCTCCAGAAGC 1675
Query 1700 ATGGGGTGGTGATAAATTTTCTGAGAAGTTTAACCAATTGGCCAATGAGAAATTTTCTGA 1759
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1676 ATGGGGTGGCGATAAATTTTCTGAGAAGTTTAACCAGTTGGCCAATGAGAAATTTTCTGA 1735
Query 1760 TAAATTTAGCCACCTGCATGCACCTTCACGTCTCGCTGTTTCAAGCACAGGTGCTAGTAC 1819
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1736 TAAATTTAGCCACCTGCATGCACCTTCACGTCTCGCGGTTTCAAGCACAGGTGCTAGTAC 1795
Query 1820 ATCTGGATCAATGTTCTCTAGCTCTCGAGATTTCCCCTTGTCGCATGGTCAGACAAACTT 1879
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1796 ATCTGGATCAATGTTCTCTAGCTCTCGAGATTTCCCCTTGTCGCTTGGTCAGACAAACCT 1855
Query 1880 CGCAAACGCTAGCTTAGAATTCCCACGGATCAGAGACTTCTCTTCAACCTTTGAGACATC 1939
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CGCAAACGCTAGCTCAGAATTCCCACGGATCAGAGACTTCTCTTCAACCTTTGAGACATC 1915
Query 1940 CTCAACACAGACAGACAACAACTTGCCTTCAAGCCCATTGTTTACAAAAGGCATCACAGC 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CTCAACACAGACAGACAACAACTTGCCTTCAAGCCCATTGTTTACAAAAGGCATCACAGC 1975
Query 2000 TCCTGGTAACATTGATTCGTTGAGGCTATCACCAAATTTTACTCGTAGGTTCTCAACATA 2059
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TCCGGGTAACATTGATTCATTGAGGCTATCACCAAATTTTACTCGTAGGTTCTCAACATA 2035
Query 2060 TGCTGAGAGAATCAGCACCACTTCTTCCTTTAGTGACGGGGCCTCTCTCAGTCTGGGTGG 2119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2036 TGCTGAGAGAATCAGCACCACTTCTTCCTTTAGTGACGGGGCCTCTCTCACTCTGGGTGG 2095
Query 2120 CTCACCCAAGATAAAGAAAACAGGCTCAGAAACGAGAGAGGAAGTTTTAAATCATCTGTT 2179
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2096 TTCACCCAAGATAAAGAAAACAGGCGCAGAAACGAGAGAGGAAGTTTTAAATCATCTGTT 2155
Query 2180 GGCAAGACCAGAGACAGTAGTTGCAACAGAAGCAGGAGCTATGCCGCTTATGAATCAGGG 2239
| | ||||||||||| || | |||||||||||||||||||||||||||||||||| ||
Sbjct 2156 GCCGAGACCAGAGACGGTGGCTGCAACAGAAGCAGGAGCTATGCCGCTTATGAAT--GG- 2212
Query 2240 AGGGTTGAAGCAATCTCAAACGGATCAACAGCA-AGTGATGGGTAGTAGCAATTTCACGC 2298
||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2213 AGGGTTGAAGCAACCTCAAACGGATCAACAGCAGA-TGATGGGTAGTAGCAATTTCACGC 2271
Query 2299 TTCAGCTATTTCAAAGAACGCTCGAAGGAACTCTGGATTCTTTCCAAAACTCAATTCATG 2358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 TTCAGCTATTTCAAAGAACGCTCGAAGGAACTCTGGATTCTTTCCAAAACTCAATTCATG 2331
Query 2359 ACGACGTAAGGAACCTTCACATTGAGATCCTCAGACAGTTCCACATGCACGAGATGGAGA 2418
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2332 ATGACGTGAGGAACCTTCACGTTGAGATCCTCAGACAGTTCCACATGCACGAGATGGAGA 2391
Query 2419 TGTCGAAGGTGTTAAGCTCGATTCTGGAGAACCAAGCGGAGCAAATGAAGGAGTTAAAGT 2478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2392 TGTCGAAGGTGTTAAGCTCGATTCTGGAGAACCAAGCGGAGCAAATGAAGGAGTTAAAAT 2451
Query 2479 TGTTGCGAAAAGAGAATCAAGAGCTCAGACAAAGGCTTTAGGGGAGACCGTTGTGAGTTT 2538
||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||
Sbjct 2452 TGTTGCGAAAAGAGAATCAAGAGCTCAAAGAAAGGCTATAGAGGAGACCGTTGTGAGTTT 2511
Query 2539 TT-TGTGTTTAAATGATGTGTGGATTTATATCTTTCTCTTTGGTACTCTTCATGTGTTCC 2597
|| |||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2512 TTGTGTGTTCAAATGTTGTGTGGATTTCTATCATTCTCTTTGGTACTCTTCATGTGTTCC 2571
Query 2598 TCTCCC-----CGATCGAATCCGTTTTGATTTCATATTATGATTGATCCGTTTGGGTTTT 2652
||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2572 TCTCCGTTTTGCGATCGAATCCATTTTGATTTCATATTATGATTGATTCGTTTGGGTTTT 2631
Query 2653 GGTAGAGATCTTGTATA-ATTTGAAACACTGCGTTTCC-T-AATCTGGAGGAAGCAAATC 2709
|||||||||||||| || ||| | |||| ||| ||||| | ||||||||||||||||| |
Sbjct 2632 GGTAGAGATCTTGTTTACATT-GTAACATTGCATTTCCATTAATCTGGAGGAAGCAAACC 2690
Query 2710 ATTAACCATGTCACAACGTTTGC 2732
||||| |||||||||||||||||
Sbjct 2691 ATTAATCATGTCACAACGTTTGC 2713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103110293215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5