BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05980.1
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487401 jgi|Araly1|487401|fgenesh2_kg.6__535__AT5G05980.1 3217 0.0
Ahg341262 jgi|Araly1|341262|fgenesh1_pg.C_scaffold_3001025 255 7e-67
> Ahg487401 jgi|Araly1|487401|fgenesh2_kg.6__535__AT5G05980.1
Length=2009
Score = 3217 bits (1742), Expect = 0.0
Identities = 1930/2020 (96%), Gaps = 16/2020 (1%)
Strand=Plus/Plus
Query 1 AAAAGAGTAAACAAAAAGCAAAAGAAGTGTAGCAATGTTAGTGACAAGAGAATGTTTGCA 60
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 1 AAAAGACTAAACAAAAAGCAAAAGAAGTGTAGCAATGTTAGAGACCAGAGAATGTATGCA 60
Query 61 GTTTCGATAGTACCTCGAACCACATCGTGCCGTTTGAGCTCTGCCTTTCTCTGTCAACTC 120
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||
Sbjct 61 GTTTCGATAGTACCTCGAACCACATCGTGCCGTTTGAGCTCTGCGTTTTTCTGCCACCTC 120
Query 121 TCGATTCCTCTCACTCTTCGGCTCCACCATCACTACCAACACCACCAGCCTCACCTACCA 180
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TCGATTCCTCTCACACTTGGGCTCCACCATCACTACCAACACCAGCAGCCTCACCTAACA 180
Query 181 TCTCCTCTCTCTTTTCAGATTCATTCGTTAAGAAAGCAGATCGACATGGCAGCTCAAGGA 240
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 --T-CTCTCTCTTTTCAGATTCGTTCGTTAAGAAAGCAGATCGACATGGCAGCTCAAGGT 237
Query 241 GGTGATTCATATGAGGAAGCGTTGGCTGCTTTGTCGTCTTTGATCACGAAACGAAGTCGT 300
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 GGTGATTCGTATGAGGAAGCGTTGGCTGCGTTGTCGTCTTTGATCACGAAACGAAGTCGT 297
Query 301 GCTGATAAGAGCAATAAAGGGGATCGCTTT-GAGTTAGTCTTTGATTATCTCAAGCTACT 359
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 298 GCTGATAAGAGCAACAAAGGGGATCG-TTTCGAGTTAGTCTTTGATTATCTCAAGCTGCT 356
Query 360 TGACCTGGAAGAAGACATTTTAAAGATGAATGTTATTCATGTCGCTGGTACCAAAGGCAA 419
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 357 TGACCTGGAAGAAGACATTTTAAAGATGAAAGTTATTCATGTCGCTGGAACCAAAGGCAA 416
Query 420 GGGATCCACATGTACCTTTACAGAGTCTATTATTCGAAACTATGGCTTTCGAACTGGACT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGGATCCACATGTACCTTTACAGAGTCTATTATTCGAAACTATGGCTTTCGAACTGGACT 476
Query 480 CTTCACTTCACCTCACCTCATTGATGTCCGGGAAAGATTTCGTTTGGATGGTGTGGACAT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 CTTCACTTCACCTCACCTCATTGATGTCCGGGAAAGATTTCGCTTGGATGGTGTGGACAT 536
Query 540 AAGTGAAGAGAAATTTTTGGGATATTTCTGGTGGTGCTATAACAGGCTCAAGGAGAGAAC 599
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGTGAGGAGAAATTCTTGGGCTATTTCTGGTGGTGCTATAACAGGCTCAAGGAGAGAAC 596
Query 600 TAACGAGGAGATACCAATGCCTACATATTTCCGCTTCCTTGCATTGCTAGCTTTTAAAAT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAACGAGGAGATACCAATGCCTACATATTTCCGCTTCCTTGCATTGCTAGCTTTTAAAAT 656
Query 660 ATTTGCTGCAGAAGAGGTAGATGCTGCTATATTGGAGGTTGGATTAGGTGGAAAGTTTGA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 657 ATTTGCTGCAGAAGAGGTAGATGCTGCTATATTGGAGGTAGGATTAGGTGGGAAGTTTGA 716
Query 720 TGCCACCAATGCGGTTCAGAAACCTGTGGTATGTGGTATTTCTTCACTCGGATATGACCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGCCACCAATGCGGTTCAGAAACCTGTGGTATGTGGTATTTCTTCACTCGGATATGACCA 776
Query 780 CATGGAAATTCTAGGTGATACACTTGGAAAAATTGCTGGTGAGAAGGCTGGAATTTTCAA 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 CATGGAAATTCTAGGTGATACACTTGGAAAAATTGCTGGGGAGAAGGCTGGAATTTTCAA 836
Query 840 GCTTGGAGTTCCAGCTTTCACAGTGCCCCAACCTGATGAAGCCATGCGTGTCCTTGAAGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCTTGGAGTTCCAGCTTTCACAGTGCCCCAACCTGATGAAGCCATGCGTGTCCTTGAAGA 896
Query 900 GAAAGCTTCCGAAACAGAAGTGAATCTCGAAGTGGTGCAGCCACTAACCGCAAGGCTGTT 959
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 897 GAAAGCTTCCGAAACAGAAGTGAATCTCCAAGTGGTGCAACCACTAACCGCAAGGCTGTT 956
Query 960 AAGTGGTCAGAAACTTGGGCTTGATGGGGAACACCAATATGTCAATGCTGGTCTAGCAGT 1019
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 957 AAGTGGTCAGAAACTTGGGCTTGATGGGGAGCACCAATATCTCAATGCTGGTCTAGCAGT 1016
Query 1020 TTCGCTTGCCTCTATCTGGCTTCAGCAAATTGGTAAACTAGAAGTTCCGAGTCGGACTCA 1079
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1017 TTCGCTTGCCTCTACCTGGCTTCAGCAAATTGGTAAACTTGAAGTTCCGAGTCGGACTCA 1076
Query 1080 GATGAGTATTCTGCCTGAGAAATTCATCAAAGGGTTAGCTACAGCGAGTTTGCAAGGACG 1139
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GATGAGTATTTTGCCTGAGCAATTCATCAAAGGGTTAGCTACAGCGAGTTTGCAAGGACG 1136
Query 1140 AGCACAGGTCGTCCCTGATCAATATACTGAATCTCGGACTTCAGGAGATCTAGTATTTTA 1199
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1137 AGCACAGGTCGTCCCCGATCAATATACTGAATCTCGGACTTCGGGAGATCTAGTATTTTA 1196
Query 1200 TCTGGATGGAGCTCACAGTCCAGAAAGCATGGAAGCATGCGCCAAATGGTTTTCGGTTGC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCTGGATGGAGCTCACAGTCCAGAAAGCATGGAAGCATGCGCCAAATGGTTTTCGGTTGC 1256
Query 1260 GGTTAAGGGAGACAACCAGTCAGGGAGTTCAGGACATTTGGTTAATGGCTCTGCAGGATC 1319
|||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1257 TGTTACGGGAGACAACCAGTCAGGGGGTTCAGGACATTTGGTTAATGGCTCCGCAGGATC 1316
Query 1320 CTCTCATGATAAATGGTCAAATGAAACCTGTGAACAGATATTGTTGTTCAATTGTATGTC 1379
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1317 CTCTCATGATAAATGGTCAAATGAAACCTGTCAACAGATATTGTTGTTCAATTGTATGTC 1376
Query 1380 AGTTCGGGACCCAAATCTACTGCTTCCACATCTAAAGAATATGTGCGCAAAATACGGTGT 1439
|||||||||||| ||||| |||||||||||||||| ||||| ||||||||| || |||||
Sbjct 1377 AGTTCGGGACCCCAATCTGCTGCTTCCACATCTAAGGAATACGTGCGCAAAGTATGGTGT 1436
Query 1440 CAATTTCAAGAAGGCATTGTTTGTACCAAACATGTCGGTGTATCATAAGGTTGGTACAGC 1499
| |||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||
Sbjct 1437 CCATTTCAAGAAGGCATTGTTTGTTCCAAATATGTCGGTGTATCACAAGGTTAGTACAGC 1496
Query 1500 AGCTGATTTGCCAGAGAATGATCCACAGGTTGACTTGTCATGGCAGTTCACACTTCAGAA 1559
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1497 AGCTGATTTGCCAGAGAATGATCCACAGGTTGACTTGTCGTGGCAGTTCACACTCCAGAA 1556
Query 1560 AGTGTGGGAAAGCCTTGTGCAGAGTGAAAGAGATGGAGAAAAAGATGGTGAAAGTGATGG 1619
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1557 AGTGTGGGAAAGCCTTGTCCAGAGTGAAAGAGAAGGAAAAAAAGATGGTGAAAGTAATGG 1616
Query 1620 AAACAGTGAGGTGTTTACTTCACTACCCATGGCAATAAAATGTCTAAGGGACACTGTACA 1679
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1617 AAACAGTGAGGTGTTTACTTCACTACCCATGGCAATCAAATGGCTAAGGGATACTGTACA 1676
Query 1680 TGAGAGTAGCTCAGCCACACGTTTCCAGGTCCTTGTAACTGGTTCGTTACATCTTGTGGG 1739
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TGACAGTAGCTCAGCCACACGTTTCCAGGTCCTTGTAACTGGTTCGTTACATCTTGTGGG 1736
Query 1740 CGATGTACTGAGATTAATCAGAAAATGAAGAGAAACAAACACACTTCACTTTTCAAATTT 1799
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1737 CGATGTACTGAGATTAATCAGAAAATGAAGAGAAACAAACACAATTCACTTTTCAAATTT 1796
Query 1800 CAATACACGAG--TCGTCATCCACCAATCACCGTACCCACTGTGGAAGAGGATGGCATTT 1857
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1797 CAATACACGAGAGTCGTCATCCACCAATCACCGTACCCACTGTGGAAGAGGATGGCCTTT 1856
Query 1858 CTTATTAAAAGCTATTTTGTATTATTTCGGTTTTAGTTTCCAGCTTAAGTACTAACAAAG 1917
||||||| | ||| ||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 1857 CTTATTA-----T-TTT-GTATTATTTCGATTTAAGTTTCCAGGTTAAGTACTAACAAAG 1909
Query 1918 TTGTGGTGATCTTTTTCAAATTCAAGAGCAATAGTTAACAAA-AAGAAAA-GGAAACATG 1975
||||| || ||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1910 TTGTGTTGTTCTTTTTCAAATTCAAGAGCAATAGTTAACAAACAAAAAAAAGGAAACATG 1969
Query 1976 TTGGCAAACGTTGTGACATGGTTAATGATTTGCTTCCTCC 2015
|| ||||||||||||||||| |||||||||||||||||||
Sbjct 1970 TTCGCAAACGTTGTGACATGATTAATGATTTGCTTCCTCC 2009
> Ahg341262 jgi|Araly1|341262|fgenesh1_pg.C_scaffold_3001025
Length=1059
Score = 255 bits (138), Expect = 7e-67
Identities = 203/234 (87%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 675 GGTAGATGCTGCTATATTGGAGGTTGGATTAGGTGGAAAGTTTGATGCCACCAATGCGGT 734
|||||||| |||||| |||||||| || ||||||| | | ||||| |||||||| |||
Sbjct 198 GGTAGATGTTGCTATCTTGGAGGTGGGCCTAGGTGGGAGGATTGATTTCACCAATGTGGT 257
Query 735 TCAGAAACCTGTGGTATG-TGGTATTTCTTCACTCGGATATGACCACATGGAAATTCTAG 793
| |||||||||||||||| ||| |||| || || || ||||||||||||||||||||||
Sbjct 258 TAAGAAACCTGTGGTATGCGGGT-TTTCATCTCTTGGCTATGACCACATGGAAATTCTAG 316
Query 794 GTGATACACTTG-GAAAAATTGCTGGTGAGAAGGCTGGAATTTTCAAGCTTGGAGTTCCA 852
| ||||| || | | |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 317 GAGATACGCTCGCG-AAAATTGCCGGTGAGAAGGCAGGAATTTTCAAGCTTGGAGTTCCA 375
Query 853 GCTTTCACAGTGCCCCAACCTGA-TGAAGCCATGCGTGTCCTTGAAGAGAAAGC 905
||||||||||||||||||| | | |||||| ||| |||||||||||||||||||
Sbjct 376 GCTTTCACAGTGCCCCAAC-TCAATGAAGCAATGTGTGTCCTTGAAGAGAAAGC 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75761497305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5