BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05987.1
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487402 jgi|Araly1|487402|fgenesh2_kg.6__536__AT5G05987.1 1328 0.0
Ahg478475 jgi|Araly1|478475|fgenesh2_kg.3__1176__AT3G11397.1 623 8e-178
> Ahg487402 jgi|Araly1|487402|fgenesh2_kg.6__536__AT5G05987.1
Length=971
Score = 1328 bits (719), Expect = 0.0
Identities = 869/937 (93%), Gaps = 28/937 (3%)
Strand=Plus/Plus
Query 9 TAATCAAACTCATCGGAGTC-TCTCGAA-T--TCGTCTTTGAAGAGGAAGAGAAGAGAAG 64
|||||||||||||||||| | ||| ||| | ||||||||||||||| | || |||| |
Sbjct 1 TAATCAAACTCATCGGAG-CTTCTTGAATTCGTCGTCTTTGAAGAGG-A-AG-AGAG--G 54
Query 65 AGGCGAGGGAGATATGGATTGGGACAACGTAGCAGCTGAGGATGTGATTGAGGCGCTT-A 123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 55 AGGCGAGGGAGATATGGATTGGGACAACGTAGCTGCTGAGGATGTGATTGAGGCG-TTGA 113
Query 124 GAGAAGTTGAATGGTCGACGCCTCCTCGTTCGTTTGGCGAGTTCTTCTCTAGATTCGCGT 183
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 114 GAGAAGTCGAATGGTCGACGCCTCCTCGTTCGTTTGGCGAGTTCTTCTCTAGATTCGCAT 173
Query 184 TCCCTCGCTCTTTCTCTAAATGGAAGAGCCGTCTCAAATGCAATCTCTACTACTATAGGA 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 174 TCCCTCGCTCTTTCTCTAAATGGAAGAGCCGCCTCAAATGCAATCTCTACTACTATAGGA 233
Query 244 CGAATTACTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CGAATTACTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGG 293
Query 304 CTCTTGTGGGTGCTGCTCTAACAGCTTTAAGTATAGCTTTCCTTAACGACAGTTTTGCAG 363
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 294 CTATTGTGGGTGCTGCTCTAACAGCCTTAAGTATAGCTTTCCTTAACGACAGTTTTGCGG 353
Query 364 CTAGTTTTAATGAGAAGTTTATAAGAACGATTAGGCATTTCTCCCCACACATGGCTGCAA 423
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 354 CTAGTTTTAATGAGAAGTTTATAAGGACGATTAGGCATTTCTCCCCACACTTGGCTGCAA 413
Query 424 AAATGAGACCTCCCCACATGCCTGTCATCCGTGGAAGATCGACAGCAAGAAAGACAGTAT 483
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 414 AAATGAGACCTCCCCACATGCCTGTCATCCGTGGAAGATCGGCAGCAAGAAAGACGGTAT 473
Query 484 ACGTTTGTGGGAAACCGCGATGGGTATTCGTTATTACTTTCCTTACAGCCAGTCTTGTCA 543
|| | ||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 474 ACATATGTGGGAAACCACGATGGGTATTCGTTGTTACATTCCTTACAGCCAGTATTGTCA 533
Query 544 TGTGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTTCTCACTTCCCTTGCTG 603
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 534 TTTGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTCCTTACTTCCCTTGCTG 593
Query 604 TGATCATTGTTCATGCAAGCATAAGAACCCCAAATCTCAAGGCACGCTTAAACACATTCC 663
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 594 TGATCATTGTTCATGCAAGCATGAGAACCCCAAATCTCAAGGCACGCTTGAACACATTCC 653
Query 664 GTGAAGAATTCCGGGCTGTCTGGCGTAACTACAGTGAACTTTAAGTCACAGGTCGCGCTA 723
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 654 GTGAAGAATTTCGGGCCGTCTGGCGTAACTATAGTGAACTTTAAGTCACAGGTCGC--TA 711
Query 724 CACAATCTAGAAACAAACAAAACAGTCATCT-GACAA--GT---G--AGGGGATGCTTTC 775
||||||||||| |||||||||||| ||| | | ||| || | |||||||||||||
Sbjct 712 AACAATCTAGAAGCAAACAAAACAGCCATGTTGTCAACTGTCAAGTTAGGGGATGCTTTC 771
Query 776 CCTCAACCATGTTCGCAGTTTATTCTTATGATG--G-CAGATGTAGCTCTATTTTTACAT 832
| ||||||||||||||||||||||||||||||| | | |||| | ||| | || ||||
Sbjct 772 CATCAACCATGTTCGCAGTTTATTCTTATGATGATGGCTGATGCA-CTCCAGTT--ACAT 828
Query 833 GGTTAAGATGGTTATTGGCAGTTCGATAGCAGACAGAATAGATTCACTTGAAATAGTGGA 892
|||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 829 GGTTAATATAGTTATTGGCAGTTCGATTGCAGACAGAATAGATTCACTTAAAATAGTGGA 888
Query 893 CATACTTGACCAAGTTACTTCTAATTGGTGTAGTGAT 929
|||||||||||||||||||||||||||||||||||||
Sbjct 889 CATACTTGACCAAGTTACTTCTAATTGGTGTAGTGAT 925
> Ahg478475 jgi|Araly1|478475|fgenesh2_kg.3__1176__AT3G11397.1
Length=943
Score = 623 bits (337), Expect = 8e-178
Identities = 552/654 (84%), Gaps = 21/654 (3%)
Strand=Plus/Plus
Query 73 GAGATATGGATTGGGACAACGTAGCAGCTGAGGATGTGATTGAGGCGCTT-AGAGAAGTT 131
|||| ||||||||||||| ||| || || ||||||||||| |||||| || ||||| ||
Sbjct 144 GAGAGATGGATTGGGACAGCGTTGCTGCCGAGGATGTGATCGAGGCG-TTAAGAGAGGTC 202
Query 132 GAATGGTCGACGCCTCCTCGTTCGTTTGG-CGAGTTCTTCTCTAGATTCGCGTTCCCTCG 190
||||||||| || ||||||||| |||| |||||||||||| |||||||| || |||||
Sbjct 203 GAATGGTCGGCGAGTCCTCGTTC-CTTGGCCGAGTTCTTCTCCAGATTCGCTTTTCCTCG 261
Query 191 CTCTTTCTCTAAATGGAAGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTA 250
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 CTCTTTCTCTAAATGGATGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTA 321
Query 251 CTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGGCTCTTGT 310
||| ||| | |||||||||||||||||||||| ||| | || |||||||||| || |
Sbjct 322 CTTCATCCTCTTGATTTTCGTTCTGGGTCTTGCACTTATCACTCGACCTCTGGCAATTCT 381
Query 311 GGGTGCTGCTCTAACAGCTTTAAG-TATAGCTTTCCTTAACGACAGTTTTGCAGCTAGTT 369
||||||||| | ||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 382 TGGTGCTGCTATTACAGCTTTAAGCT-TAGCTTTCCTTAACGACAGTTTTGCAGCTACTT 440
Query 370 TTAATGAGAAGTTTATAAGAACGATTAGGCATTTCTCCCCACACATGGCTGCAAAAATGA 429
||||||||||| | || | || ||||||||| |||| ||||| | ||||| || ||||
Sbjct 441 TTAATGAGAAGATGATCCGGACCATTAGGCATATCTCGCCACATTTAGCTGCCAAGATGA 500
Query 430 GACCTCCCCACATGCCTGTCATCCGTGGAAGATC-GACAGCAAGAAAGACAGTATACGTT 488
| |||||||||||||||||||| ||||| |||| | || | ||||||||||| ||| ||
Sbjct 501 GGCCTCCCCACATGCCTGTCATTCGTGGGCGATCTG-CAACTAGAAAGACAGTCTACATT 559
Query 489 TGTGGGAAACCGCGATGGGTATTCGTTATT-ACTTTCCTTA-CAGCCAGTCTTGT-CATG 545
||||| |||| || | ||||||||| || | || |||| | |||||| |||| | ||
Sbjct 560 TGTGGCCAACCTCGTTTGGTATTCGTG-TTGA-TTGGCTTAACCGCCAGTTTTGTTC-TG 616
Query 546 TGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTT-CTCACTTCCCTTGCTG- 603
||||| | |||||||||||||| ||||||||||||||| || | |||| || || ||
Sbjct 617 TGGTTCACGTCCTGCGGTTTGTTATGGGTCCTCTATGCATTTAC-CACTGCCATT-CTCA 674
Query 604 TGAT-CATTGTTCATGCAAGCATAAGAACCCCAAATCTCAAGGCACGCTTAAACACATTC 662
|||| | || |||| |||||| | ||||| ||||| |||||||||||||| |||||||||
Sbjct 675 TGATAC-TTCTTCACGCAAGCCTGAGAACTCCAAACCTCAAGGCACGCTTGAACACATTC 733
Query 663 CGTGAAGAATTCCGGGCTGTCTGGCGTAACTACAGTGAACTTTAAGTCA-CAGG 715
|||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 734 CGTGAAGAATTCAGGGCTGTCTGGCGTAACTACAGCGAACTCTAAGTCAACAGG 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37093598241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5