BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05990.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325224 jgi|Araly1|325224|fgenesh1_pm.C_scaffold_6000444 1186 0.0
> Ahg325224 jgi|Araly1|325224|fgenesh1_pm.C_scaffold_6000444
Length=780
Score = 1186 bits (642), Expect = 0.0
Identities = 737/781 (94%), Gaps = 14/781 (2%)
Strand=Plus/Plus
Query 13 ATGGCGACTCTTGTACGTCGCGCAGCTTCTCGGTTTGTGGGAAGTTATTGGAAAAACCGT 72
|||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 1 ATGGCGACTCTTGTACGTCGCGCAGCTTCTCGGTTTGTCGGAAATTATTGCAAGAACCGT 60
Query 73 TCTTTCGTTTACTCATTGTTGGACCAGTCCGCTT-CTGGCCGGAGGCGACATCTGACGCC 131
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 61 TCTTTCGTTTACTCATTGTTGGACCAGTCCGCTTAC-GGCCGGAGGCGACATCTGACGCC 119
Query 132 GTCGGTTGACCGGAATGTTCCATTTACCACATCGACCAAAAAGAGAGCTTCTCCAACTGA 191
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 GTCGGTTGACCAGAACGTTCCATTTACCACATCGACCAAAAAGAGAGCTTCTCCAACCGA 179
Query 192 TCCGCTTCTTCGAATCATTGAAGA-GGAGATTGGATACGCCGAGAAAGCTGATGATTATC 250
|||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
Sbjct 180 TCCGCTTCTTCGAATCATCGAA-ACGGAGATTGGATACGCCGAGAAAGCTGATGATTA-C 237
Query 251 -ATCGAGTTGAAGAAACTCCAAGTGG-CTTCCCTTTCGAAATGGAAGACAAACCAGGAGG 308
||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 238 GATCGAGTTGAAGAAACTCCAAGTGGTTTTCCC-TTCAAAATGGAAGACAAACCTGGAGG 296
Query 309 GAAGATTGTGACATTGACTAGAGAATATGAAGGAGAGACTGTTAAAGTTGAAGTACACAT 368
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 AAAGATCGTGACATTGACTAGAGAATACGAAGGAGAGACTGTTAAAGTTGAAGTACACAT 356
Query 369 GACTAATCTTGTGACTGGTGACAaagaagatgatgaagatgatgaggaagaagcagagaa 428
||| |||||||| || |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 357 GACCAATCTTGTCACAGGTGACAAAGAAGACGATGAAGATGATGAGGAAGAGGCAGAGAA 416
Query 429 tgaagaagatgaagatgaggataagccat-tgaagCCTAAGCAATCGAATGTGCCTCTCT 487
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 417 TGAAGAAGATGAAGATGAGGATAAGCC-TGAGAAGCCTAAGCAATCGAATGTGCCTCTCT 475
Query 488 TAGTAACTCTTTCCAAGAAGACAGGA-CCAAGTTTGGAATTTAGATGTACTGCTTTTCCA 546
|||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 476 TAGTTACTTTTTCCAAGAAGACAGGATCC-AGTTTGGAATTCAGATGTACTGCTTTTCCA 534
Query 547 GACAGGATTGCGATCAAGGACATGTGGGTTACATTTCCTGATGATCCTTCCAAAGATGAG 606
|||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 535 GACAAGATTGTAATCAAGGACATGTGGGTTACATTTCCTGATGATCCATCTAAAGATGAG 594
Query 607 CTTGCTTATGAAGGACCTTCCTTCAGGGTTTTGGATGAAAAGCTAAGGAAGGCT-TTCCA 665
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 595 CTTGCTTATGAAGGCCCTTCCTTCAGGGTTTTGGATGAAAAGCTAAGGAAGG-TATTCCA 653
Query 666 TAGGTACATTGAGATTAGAGGGATAAAGCCGAGCATGATCAACTTCTTGCACGAGTACAT 725
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 TAGGTACATTGAGATTAGAGGGATAAAGCCGAGCATGATCAACTTCTTACACGAGTACAT 713
Query 726 GATCAACAAGGATAGTAGAGAGCACTTACTGTGGTTGAAATCTCTCAAGAACTTTGTCAA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GATCAACAAGGATAGTAGAGAGCACTTACTGTGGTTGAAATCTCTCAAGAACTTTGTCAA 773
Query 786 G 786
|
Sbjct 774 G 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5