BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06000.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487404 jgi|Araly1|487404|fgenesh2_kg.6__538__AT5G06000.1 1288 0.0
Ahg906333 jgi|Araly1|906333|Al_scaffold_0003_3461 387 1e-106
> Ahg487404 jgi|Araly1|487404|fgenesh2_kg.6__538__AT5G06000.1
Length=924
Score = 1288 bits (697), Expect = 0.0
Identities = 819/877 (93%), Gaps = 11/877 (1%)
Strand=Plus/Plus
Query 16 AAAAATGGCGATTGATACGATACaaaaaacaaaaaaGCTTCGGTGGGGAGAAATTGACGA 75
|||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1 AAAAATGGCGATTGATTCGATGCAAAAAACAAACAAGCTTCGATGGGGAGAAATTGACGA 60
Query 76 AGAAGAAGGCGACTATGATTTCCTTCTTCCGCCTAAGCAGATGATTAGTCCGGACCAGAA 135
|||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 61 AGAAGAAGACGACTTTGATTTCCTTCTTCCGCCTAAGCAAATGATTGGTCCGGACCAGAA 120
Query 136 CGGTGTAAAGAAGGTGATTGAGTACAAATTCAACGAAGAGGACAAAAAGGTCAAAATCAC 195
|||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||
Sbjct 121 CGGTGTAAAGAAAGTGATTGTGTACAAGTTCAACGACGAGGGCAAAAAGGTCAAAATCAC 180
Query 196 TACCACGACCCGTGTTCAGAAGCGAGCTCTCACCAAACAAGCCGTGGAGCGACGGAGCTG 255
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TACCACGACTCGTGTTCAGAAGCGAGCTCTGACCAAACAAGCCGTGGAGCGACGGAGCTG 240
Query 256 GAATAAGTTCGGAGACGCAGCTC-ATGAAGAATCCAGTAGTTACCTCACAATGCGTTCAA 314
||||||||||||||||||||| | |||| ||| || |||| |||||||||||||||||||
Sbjct 241 GAATAAGTTCGGAGACGCAGC-CAATGAGGAAGCCGGTAGCTACCTCACAATGCGTTCAA 299
Query 315 CAGAGGATATCATCTTGGAACGAATTAGAGCTCCTGGTAGCAACGCGGAACAGTCGACCG 374
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||
Sbjct 300 CAGAGGATATCATCTTGGATCGAATTAGAGCTCCTGGTAGCAACGTGGAACAGTCCA-CG 358
Query 375 -TATCAGGAGATAGCATGTCTCAGTTGGGCAAACCGGGTGCGGTCCTCATGGTCTGCAGG 433
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 359 ATATCAGGAGATAGCATGTCTCACCTGGGAAAACCGGGTGCGGTCCTCATGGTCTGCAGG 418
Query 434 TTATGCCAAAAGAAAGGTGACCACTGGACATCAAGATGCCCACAGAAGGATCTCTTATCC 493
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTATGCCACAAGAAAGGTGACCACTGGACATCAAGATGCCCACAGAAGGATCTCTTATCC 478
Query 494 TTAATGGACGAGCCTTTAACAGCAGAAACTTCTACATCGACCATA-----A-CTGGAACT 547
|||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 479 TTAATGGACGAGCCTTTAACAGCAGAAACTTCTACATCGAGCATAGCTGGAACTGGAACT 538
Query 548 GGCAGGGCGGCTTATGTCCCGCCAAGCATGAGAGAAGGTGCAGACAGAAAAGCTGGTGGT 607
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 539 GGCAAGGCTGCTTATGTCCCGCCAAGTATGAGAGAAGGTGCAGACAGAAAAGCTGGTGGT 598
Query 608 TCAGACATGAGGAGTAGACATGATGAGAACTCTGTCCGTGTGACTAATTTGTCTGAAGAT 667
|||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||
Sbjct 599 TCAGACATGAGGAGTAGAAATGAAGGGAACTCTGTCCGTGTGACTAACTTGTCTGAAGAT 658
Query 668 ACCCGTGGACCAGATTTGATGGAGTTGTTTCGTCCGTTTGGTGCTGTAACCCGTTGTCAT 727
||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 659 ACCCGTGGACCGGATTTGATGGAGTTGTTTCGTCCGTTTGGTTCTGTAAACCGTTGTCAT 718
Query 728 GTAGCCATTGATCAGAAGACAAGCATGAGCAGAGGATTTGGTTTTGTCAGTTTTGTGAGC 787
|||||||| | |||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 719 GTAGCCATACACCAGAAGGCGAGCATGAGCAGAGGATTTGGTTTTGTCAGTTTTGTCAGG 778
Query 788 AGGGAAGATGCACAGCGAGCAATCAACAAATTGAATGGCTATGGTTATGATAACCTCATT 847
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 779 AGGGAAGATGCACAGCGAGCAATCAACACATTGAATGGCTATGGCTATGATAACCTCATT 838
Query 848 CTTAGGGTTGAATGGTCCACTCCTAAAACCCAATTAG 884
||||||||||||||| ||||||||||| |||||||||
Sbjct 839 CTTAGGGTTGAATGGGCCACTCCTAAA-CCCAATTAG 874
> Ahg906333 jgi|Araly1|906333|Al_scaffold_0003_3461
Length=255
Score = 387 bits (209), Expect = 1e-106
Identities = 235/247 (95%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 639 CTGTCCGTGTGACTAATTTGTCTGAAGATACCCGTGGACCA-GATTTGATGGAGTTGTTT 697
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 11 CTGTCCGTGTGACTAATTTGTCTGAAGATACCCGTGGA-CAGGATTTGATGGAGTTGTTT 69
Query 698 CGTCCGTTTGGTGCTGTAACCCGTTGTCATGTAGCCATTGATCAGAAGACAAGCATGAGC 757
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 70 TGTCCGTTTGGTTCTGTAACCCGTTGTCATGTAGCCATTGACCAGAAGACGAGCATGAGC 129
Query 758 AGAGGATTTGGTTTTGTCAGTTTTGTGAGCAGGGAAGATGCACAGCGAGCAATCAACAAA 817
||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 130 AGAGGATTTGGATTCGTCAATTTTGTGAGCAGGGAAGATGCACAGCGAGCAATCAACACA 189
Query 818 TTGAATGGCTATGGTTATGATAACCTCATTCTTAGGGTTGAATGGTCCACTCCTAAAACC 877
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 190 TTGAATGGCTATGGTTATGATAACCTCATTCTTAGGGTTGAATGGGCCACTCCTAAA-CC 248
Query 878 CAATTAG 884
|||||||
Sbjct 249 CAATTAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5