BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06010.1

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940033 jgi|Araly1|940033|scaffold_600577.1                        475    7e-134
  Ahg480434 jgi|Araly1|480434|fgenesh2_kg.3__3135__AT5G06010.1         195    2e-49 


> Ahg940033 jgi|Araly1|940033|scaffold_600577.1
Length=371

 Score =  475 bits (257),  Expect = 7e-134
 Identities = 306/329 (93%), Gaps = 6/329 (2%)
 Strand=Plus/Plus

Query  1    ATGGGAAACAAGGACTCGAAAGGCTCTTCTTCTTCAACCAATCCGAAAGAGGAGATTGCT  60
            |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct  21   ATGGGAAACAAGGATTCGAAAGGCTCTTCTTCTACAACCAATCCGAAAGGGGAGATTGCT  80

Query  61   GCTGTACCTCAGCCTCAA---CAGTCAC---CACCGCAATTGATCCGAAAATCGCAACCA  114
            |||| | |||||||||||   ||  |||   |||||| ||||||||||||||||||||||
Sbjct  81   GCTGCATCTCAGCCTCAACTGCAACCACAGTCACCGCTATTGATCCGAAAATCGCAACCA  140

Query  115  CAGCAGCCATTACCACCACCTTCGTCTGAGATGCCTCTTCTCTATCCGTGTTACAAAAAA  174
            ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  141  CAGCAACCATTACCACCACCCTCATCTGAGATGCCTCTTCTCTATCCTTGTTACAAAAAA  200

Query  175  GAAGACTATGAGAAAATGAGCGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATC  234
            |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  201  GAAGACTATGAGAAAATGAGCGAAGAGACAATCGATATGCTCCTAGCCACTTACGGAATC  260

Query  235  ATGACAGTCCCTGGCGATTTAGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGG  294
            |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct  261  ATGACAGTCCCTGGCGATTTGGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGG  320

Query  295  GATCATAAGAACAATCACCCCAAAGCTTA  323
            |||||||||||||||||||||||||||||
Sbjct  321  GATCATAAGAACAATCACCCCAAAGCTTA  349


> Ahg480434 jgi|Araly1|480434|fgenesh2_kg.3__3135__AT5G06010.1
Length=237

 Score =  195 bits (105),  Expect = 2e-49
 Identities = 121/129 (94%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  195  CGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATCATGACAGTCCCTGGCGATTT  254
            |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct  108  CGAAGAGAAAATCGCTATGCTCTTAGAGACTTACGGAATCATGACAGTCCCTGGTGATTT  167

Query  255  AGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC  314
             ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  168  GGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC  227

Query  315  CAAAGCTTA  323
             ||||||||
Sbjct  228  TAAAGCTTA  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11446676700


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5