BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06010.1 Length=324 Score E Sequences producing significant alignments: (Bits) Value Ahg940033 jgi|Araly1|940033|scaffold_600577.1 475 7e-134 Ahg480434 jgi|Araly1|480434|fgenesh2_kg.3__3135__AT5G06010.1 195 2e-49 > Ahg940033 jgi|Araly1|940033|scaffold_600577.1 Length=371 Score = 475 bits (257), Expect = 7e-134 Identities = 306/329 (93%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 1 ATGGGAAACAAGGACTCGAAAGGCTCTTCTTCTTCAACCAATCCGAAAGAGGAGATTGCT 60 |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 21 ATGGGAAACAAGGATTCGAAAGGCTCTTCTTCTACAACCAATCCGAAAGGGGAGATTGCT 80 Query 61 GCTGTACCTCAGCCTCAA---CAGTCAC---CACCGCAATTGATCCGAAAATCGCAACCA 114 |||| | ||||||||||| || ||| |||||| |||||||||||||||||||||| Sbjct 81 GCTGCATCTCAGCCTCAACTGCAACCACAGTCACCGCTATTGATCCGAAAATCGCAACCA 140 Query 115 CAGCAGCCATTACCACCACCTTCGTCTGAGATGCCTCTTCTCTATCCGTGTTACAAAAAA 174 ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 141 CAGCAACCATTACCACCACCCTCATCTGAGATGCCTCTTCTCTATCCTTGTTACAAAAAA 200 Query 175 GAAGACTATGAGAAAATGAGCGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATC 234 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 201 GAAGACTATGAGAAAATGAGCGAAGAGACAATCGATATGCTCCTAGCCACTTACGGAATC 260 Query 235 ATGACAGTCCCTGGCGATTTAGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGG 294 |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| Sbjct 261 ATGACAGTCCCTGGCGATTTGGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGG 320 Query 295 GATCATAAGAACAATCACCCCAAAGCTTA 323 ||||||||||||||||||||||||||||| Sbjct 321 GATCATAAGAACAATCACCCCAAAGCTTA 349 > Ahg480434 jgi|Araly1|480434|fgenesh2_kg.3__3135__AT5G06010.1 Length=237 Score = 195 bits (105), Expect = 2e-49 Identities = 121/129 (94%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 195 CGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATCATGACAGTCCCTGGCGATTT 254 |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 108 CGAAGAGAAAATCGCTATGCTCTTAGAGACTTACGGAATCATGACAGTCCCTGGTGATTT 167 Query 255 AGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC 314 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC 227 Query 315 CAAAGCTTA 323 |||||||| Sbjct 228 TAAAGCTTA 236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11446676700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5