BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06030.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931342 jgi|Araly1|931342|scaffold_303799.1                        571    1e-162


> Ahg931342 jgi|Araly1|931342|scaffold_303799.1
Length=495

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 412/460 (90%), Gaps = 14/460 (3%)
 Strand=Plus/Plus

Query  1    ATGATAAACTCATCCA-AAATCAATCTCTATTCTTATGTT-TGCTCAATTTTCATTATGT  58
            |||||||||||||||| |||  |||||| |||||||| || ||||||||||||| |||||
Sbjct  21   ATGATAAACTCATCCAGAAA-AAATCTCAATTCTTAT-TTCTGCTCAATTTTCACTATGT  78

Query  59   CCATAGTTGTGATATCTTTGATATGTTCAGAAGCTCTTCAAATTCAACAAGCTAAAGAAC  118
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  79   CCATAGTTGTGATATCTTTGATATGTTCAGAAGCTTTTCCAATTCAACAAGCTAAAGAAC  138

Query  119  CATTTCGAGGTCATCTTACGAGAGTCACGATTCAAAATTATAATGACTATCTTCTTGCAA  178
            ||  |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct  139  CACCTCGAGGTCATCTTACGAGAGTCACGATTCAAAATGATAACGACTATCTTCTTGGAA  198

Query  179  TTCATTGTAAATCAAGAGATGATGATTTAGGCTTTCACATACTTGCTAAAGGTGAACTT-  237
            | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || 
Sbjct  199  TCCATTGTAAATCAAGAGATGATGATTTAGGATTTCACATTCTTGCTAAAGGTGAA-TTA  257

Query  238  TTTGGTTGGAAGTTTCATGTTAATTTTCGTTATTCGACGCTCTGTTTTTGTGGTTTTAGC  297
            |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct  258  TTTGGTTGGAAGTTTCATGTCAATTTTCGTTATTCAACGCTCTATTTTTGTGGTTTTAGC  317

Query  298  CAAAGACAAATAAATAAAGGTGTGTTT-ATAATTTAT-GTAGC-ATCTAGAGATTTTTAT  354
            ||| || ||||||| ||||| |||||  | ||||||  | ||| |  |||||||||||||
Sbjct  318  CAAGGAAAAATAAAGAAAGGCGTGTTCGA-AATTTACAG-AGCGAA-TAGAGATTTTTAT  374

Query  355  AGATGTGCAAACTGTACATGGAAAGCTGAGAAAG-ATGGTTTTCATGGATATGGTGATAT  413
            ||||||||||| ||||||||||||||||| |||| ||||| |||||||||||   |||||
Sbjct  375  AGATGTGCAAATTGTACATGGAAAGCTGA-AAAGGATGGTGTTCATGGATATACCGATAT  433

Query  414  TCCTACTAGAGGTTATTTATTTTATAATTGGTTAAACTAA  453
            |||||  | | ||||||||||||||| ||||||||| |||
Sbjct  434  TCCTAAGAAAAGTTATTTATTTTATAGTTGGTTAAAGTAA  473



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5