BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06050.1
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487406 jgi|Araly1|487406|fgenesh2_kg.6__540__AT5G06050.1 3304 0.0
Ahg483001 jgi|Araly1|483001|fgenesh2_kg.4__2061__AT2G39750.1 863 0.0
Ahg927852 jgi|Araly1|927852|scaffold_300309.1 220 3e-56
> Ahg487406 jgi|Araly1|487406|fgenesh2_kg.6__540__AT5G06050.1
Length=2494
Score = 3304 bits (1789), Expect = 0.0
Identities = 1987/2082 (95%), Gaps = 15/2082 (1%)
Strand=Plus/Plus
Query 38 GGTAATGCTTCTGA-GAATTGGAAGCTAATGAAGCTCTTCCTCAA-TAGCAATCTGCTCA 95
|||||||||||| | ||||| ||||||||||||||||||| | || ||||||||||||||
Sbjct 21 GGTAATGCTTCT-ACGAATTCGAAGCTAATGAAGCTCTTCGT-AAGTAGCAATCTGCTCA 78
Query 96 GAAACTCTATTTTCTTCAAGATCTCCGCCTTTGTTTTGATCTCCGTTGCTTGTTTCTTCC 155
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 GAAACTCTGTTTTCTTCAAGATCTCCGCCTTTGTTTTGATCTCCGTTGCTTGTTTCTTCC 138
Query 156 TCGGTAAGCATTGGTCTGAGGATGGCTTCCGCCGTCTCATCTTCTTCTCCGCCGAGCCTT 215
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCGGTAAACATTGGTCTGAGGATGGCTTCCGCCGTCTCATCTTCTTCTCCGCCGAGCCTT 198
Query 216 CCCGATCTCCCATTGTCGCACTCTCACCTGATTTCGGAAAAACCTATAACATCTCTGGTT 275
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 199 CTCGATCCCCCATTGTCGCACTCTCACCTGATTTCGGAAAAACGTATAACATCTCTGATT 258
Query 276 TGATCTATGAGAGTCACCCGATTTTGCCTCCGTCTTTGTCACCACCGCCGCCGCCAGATT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TGATCTATGAGAGTCACCCGATTTTGCCTCCGTCTTTGTCACCACCGCCGCCGCCAGATT 318
Query 336 CTGTTGAGTTGAAGGTGTTTGGAATCGTTAATGAGAACGGAACAATGTCTGATGAGTTT- 394
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 319 CTGTTGAGCTGAAGGTGTTTGGGATCGTTAATGAGAATGGAACAATGTCTGATGA-TTTC 377
Query 395 CAGATTGGTGATTACGACGTTGAGTCGGCGGAGACGTTGGGGAATCAGACGGAATTCGAG 454
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 CAGATTGGTGATTACGACGCTGAATCGGCGGAGACGTTGGGGAATCAGACGGAATTCGAG 437
Query 455 AGTAGCGACGACGATGATATTAAATCCACCACAGCTAGAGTTAGTGTGAGGAAATTTGAG 514
|||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 438 AGTAGCGACG--G-TGATATTAAATCCACCACGGCTAGAGTTAGTGTGAGGAAATTCGAG 494
Query 515 ATTTGTTCGGAGAATATGACTGAGTACATTCCTTGTTTGGATAATGTAGAAGCCATCAAA 574
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 ATGTGTTCGGAGAATATGACGGAGTACATTCCTTGTTTGGATAATGTAGAAGCCATCAAA 554
Query 575 AGGCTTAATTCAACGGCGCGTGGTGAGCGATTCGAACGGAATTGTCCTAACGATGGAATG 634
||||||||||| ||||||||||| |||||||| || |||||||||||||| || ||||||
Sbjct 555 AGGCTTAATTCGACGGCGCGTGGAGAGCGATTTGAGCGGAATTGTCCTAAAGAAGGAATG 614
Query 635 GGATTGAATTGCACCGTTCC-GATTCCTCAA-GGATACCGTAGTCCGATTCCGTGGCC-G 691
|| ||||||||||||||||| | |||| ||| || |||||| ||||||||||||||| |
Sbjct 615 GGGTTGAATTGCACCGTTCCTG-TTCC-CAATGGGTACCGTCCTCCGATTCCGTGGCCGG 672
Query 692 AGAAGCCGTGATGAGGTGTGGTTCAACAATGTTCCACATACTAAACTTGTTGAAGACAAA 751
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 673 A-AAGCCGTGATGAGGTGTGGTTCAACAATGTTCCACATACTAAACTTGTTGAAGATAAA 731
Query 752 GGTGGTCAAAATTGGATTTATAAAGAGAATGACAAATTTAAGTTTCCTGGTGGTGGTACT 811
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 732 GGTGGTCAAAACTGGATTTACAAAGAGAATGACAAATTCAAGTTTCCTGGTGGTGGTACT 791
Query 812 CAGTTTATACACGGAGCTGATCAGTACTTGGATCAGATCTCTCAGATGATTCCTGATATT 871
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CAGTTTATACACGGGGCTGATCAGTACTTGGATCAGATCTCTCAGATGATTCCTGATATC 851
Query 872 AGCTTTGGTAACCATACACGAGTTGTTCTTGACATTGGATGTGGTGTGGCAAGTTTTGGT 931
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 852 AGCTTTGGTAATCATACACGAGTTGTTCTTGACATTGGATGCGGTGTGGCAAGTTTTGGT 911
Query 932 GCCTACTTAATGTCACGAAATGTCTTGACTATGTCTATAGCTCCAAAAGATGTTCACGAG 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GCCTACTTAATGTCACGAAATGTCTTGACTATGTCTATAGCTCCAAAAGATGTTCACGAG 971
Query 992 AACCAGATACAGTTTGCTCTTGAGCGTGGTGTTCCTGCAATGGTGGCAGCATTCACAACA 1051
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 972 AACCAGATACAATTTGCTCTCGAGCGTGGTGTTCCTGCAATGGTGGCAGCATTCACAACA 1031
Query 1052 CGGAGATTGTTGTATCCAAGCCAAGCTTTTGATTTGGTACATTGTTCAAGATGTAGAATC 1111
|||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1032 CGGAGACTGTTGTACCCAAGCCAAGCTTTTGATTTGGTTCATTGTTCAAGATGTAGAATC 1091
Query 1112 AACTGGACTCGTGATGATGGGATCCTGCTCCTTGAAGTTAATAGGATGCTTCGTGCCGGA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AACTGGACTCGTGATGATGGGATCCTGCTCCTTGAAGTTAATAGGATGCTTCGTGCCGGA 1151
Query 1172 GGATATTTTGTTTGGGCAGCACAACCTGTATATAAGCATGAAAAGGCCTTGGAAGAACAG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GGATATTTTGTTTGGGCAGCACAACCTGTATATAAGCATGAAAAGGCCTTGGAAGAACAG 1211
Query 1232 TGGGAAGAGATGCTAAACCTGACCACTAGGCTGTGCTGGGTTCTTGTAAAGAAGGAAGGA 1291
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1212 TGGGAAGAGATGCTAAACCTTACCACTAGGCTATGCTGGGTTCTTGTAAAGAAGGAAGGA 1271
Query 1292 TATATAGCTATCTGGCAGAAGCCTGTAAATAACACTTGTTACCTAAGTCGTGGTGCTGGA 1351
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1272 TATATAGCTATCTGGCAGAAGCCTGTAAATAACACTTGTTATCTTAGTCGTGGTGCTGGA 1331
Query 1352 GTCAGTCCTCCTTTGTGCAATTCTGAAGATGACCCAGATAATGTTTGGTACGTGGATCTG 1411
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1332 GTCACTCCTCCTTTGTGCAATTCTGAAGATGACCCAGATAATGTTTGGTACATGGATCTG 1391
Query 1412 AAGGCATGCATCACTAGAATTGAAGAAAATGGATATGGAGCAAATCTTGCTCCTTGGCCA 1471
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1392 AAGGCATGCATTACTAGAATTGAAGAAAATGGATATGGAGCGAATCTTGCTCCTTGGCCA 1451
Query 1472 GCTCGTTTACTGACCCCACCGGATAGGCTGCAGACAATACAAATTGATTCATACATAGCC 1531
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1452 GCTCGTTTACAGACCCCACCGGATAGGCTGCAGACAATACAAATTGATTCTTACATAGCC 1511
Query 1532 CGAAAAGAGCTATTTGTAGCCGAATCAAAGTACTGGAAAGAAATAATATCAAACTATGTA 1591
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1512 CGAAAAGAGCTCTTTGTAGCTGAATCAAAGTACTGGAAAGAAATAATATCAAACTATGTA 1571
Query 1592 AATGCCCTACACTGGAAGCAGATAGGACTCAGAAATGTCTTGGACATGAGAGCTGGATTT 1651
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1572 AATGCCCTACACTGGAAGCAGATAGGACTCAGAAATGTCTTGGACATGAAAGCTGGATTT 1631
Query 1652 GGCGGATTTGCAGCTGCATTAGCTGAGCTAAAGGTTGACTGCTGGGTTCTTAACGTCATC 1711
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1632 GGCGGATTTGCAGCTGCATTAGCTGAGCTAAAGGTTGATTGCTGGGTTCTCAACGTTATC 1691
Query 1712 CCAGTGAGTGGTCCCAACACATTGCCTGTTATATATGACCGTGGACTGCTTGGAGTTATG 1771
||||| ||||||||||||||||| || |||||||||||||||||||| || ||||| |||
Sbjct 1692 CCAGTCAGTGGTCCCAACACATTACCCGTTATATATGACCGTGGACTACTAGGAGTAATG 1751
Query 1772 CACGATTGGTGTGAACCTTTTGATACTTACCCAAGAACCTACGATTTGCTGCATGCTGCG 1831
|| ||||||||||| || || ||||||||||| |||| |||||||||||||||||| |||
Sbjct 1752 CATGATTGGTGTGAGCCATTCGATACTTACCCGAGAAGCTACGATTTGCTGCATGCCGCG 1811
Query 1832 GGTCTGTTTTCCATTGAAAGAAAAAGATGCAACATGACAACAATGATGCTAGAGATGGAC 1891
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1812 GGTCTATTTTCCATTGAAAGAAAAAGGTGCAACATGACAACGATGATGCTAGAGATGGAC 1871
Query 1892 CGGATTTTAAGACCTGGAGGACGTGTATACATACGGGACACAATCAATGTAACGAGTGAG 1951
|||||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 1872 CGGATTTTGAGACCTGGAGGACGTGTATACATACGGGATACTATCAATGTAATGAGTGAG 1931
Query 1952 CTTCAAGAGATTGGAAACGCAATGAGGTGGCACACGAGCTTACGTGAAACTGCTGAAGGA 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 CTTCAAGAGATTGGAAACGCAATGAGGTGGCACACGAGCTTACGTGAAACTGCTGAAGGA 1991
Query 2012 CCTCACTCAAGTTACAGGGTTCTCTTATGTGAGAAGCGGTTTGAATCGTCTGAGAAGCGT 2071
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1992 CCTCACGCAAGTTACAGGGTTCTCGTATGTGAGAAGCGGTTAGAATCGTCTGAGAAGCGT 2051
Query 2072 CGTACCAAGAAGAGGAGGAAGACTAAAGGAAAAAGAGCTTGA 2113
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2052 CGTACCAAGAAGAAGAGGAAGACTAAAGGAAAAAGAGCTTGA 2093
Score = 532 bits (288), Expect = 3e-150
Identities = 378/418 (90%), Gaps = 20/418 (5%)
Strand=Plus/Plus
Query 1862 AACATGACAACAATGATGCTAGAGATGGACCGGATTTTAAGACCTGGAGGACGTGTATAC 1921
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 AACATGACAACGATGATGCTAGAGATGGACCGGATTTTAAGACCTGGAGGACGTGTATAC 2154
Query 1922 ATACGGGACACAATCAATGTAACGAG-TGAGCTTCAAGAGATTGGAAACGCAATGAGGTG 1980
|||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||
Sbjct 2155 ATACGGGACACAATCAATGTAATGAGCT-AGATTCAAGAGATTGGAAACGCAATGAGGTG 2213
Query 1981 GCACACGAGCTTACGTGAAACTGCTGAAGGACCTCACTCAAGTTACAGGGTTCTCTTATG 2040
||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2214 GCACATGAGCTTATGTAAAACTGCTGAAGGACCTCACTCAAGTTACAGGATTCTCTTATG 2273
Query 2041 TGAGAAGCGGTTTGAATCGTCTGAGAAGCGTCGTACCAAGAAGAGGAGGAAGACTAAAGG 2100
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 2274 TGAGAAGCAGTTTGAATCGTCTGAGAAGCGTCGTACCAAGAAGAAGAGGAAGAGTAGAGG 2333
Query 2101 -AAAAAGAGCTTGACATTTTCATAGAATACAAGTGCTGGGCTAGAATTTTCTGGGGATCT 2159
||||| |||||||||||| |||||||| ||||| ||||||| || |||||||||||||
Sbjct 2334 GAAAAA-AGCTTGACATTTACATAGAATGTAAGTGATGGGCTACAAGTTTCTGGGGATCT 2392
Query 2160 TTGGATCAATGGACAATGGTTAGTTTAGTTGGGAGGCTTTTTGGAATTTTAGAAAAATTA 2219
||| |||||||| | | |||||||||||||||||||| |||||||||||||| |||
Sbjct 2393 TTG-ATCAATGG----T--T-AGTTTAGTTGGGAGGCTTTT-GGAATTTTAGAAAAGTTA 2443
Query 2220 GGGACCTGAAACAGTGAAACTGTTTGTGAGGTTTTGGCGTTTAACCCTCTTTAAAGTT 2277
| ||| | | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2444 GTGAC-T----C--TGAAACTGTTTGTGAGGTTTTGGCGTTTAACCCTCTTTAACGTT 2494
> Ahg483001 jgi|Araly1|483001|fgenesh2_kg.4__2061__AT2G39750.1
Length=2143
Score = 863 bits (467), Expect = 0.0
Identities = 1240/1605 (77%), Gaps = 86/1605 (5%)
Strand=Plus/Plus
Query 488 GCTAGAGTTAGTGTGAGGAAATTTGAGATTTGTTCG-GAGAATATGACTGAGTACATTCC 546
||||| ||||| | | |||||||| ||| || ||| |||| ||||| ||||| || ||
Sbjct 497 GCTAGGGTTAGAATTAAGAAATTTGGGATGTG-TCGTGAGAGTATGAGAGAGTATATACC 555
Query 547 TTGTTTGGATAAT-GTAGAAGCCATCAAA-AGGCTTAATTCAACGGCGCGTGGTGAGCGA 604
||||||||||||| | || || || ||| | ||| || || || | || |||||| ||
Sbjct 556 TTGTTTGGATAATACT-GATGCGAT-AAAGAAGCTCAAATCTACAGAACGAGGTGAGAGA 613
Query 605 TTCGAACGGAATTGTCCTAACG-ATGG-AATGGGATTGAATTGCACCGTTCCGATTCCTC 662
||||| || |||||||| | | | || || || ||||||||| |||||| ||||
Sbjct 614 TTCGAGCGTCATTGTCCTGA-GAAAGGTAA-AGGCTTGAATTGCTTGGTTCCGCCTCCTA 671
Query 663 AAGGATACCGT-AGTCCGATTCCGTGGCCGAGAAGCCGTGATGAGGTGTGGTTCAACAAT 721
|||| || ||| || |||||||| ||||| | ||| ||||| ||||| ||||| | ||||
Sbjct 672 AAGGTTATCGTCAG-CCGATTCCATGGCCTAAAAGTCGTGACGAGGTATGGTTTAGCAAT 730
Query 722 GTTCCACATACTAAACTTGTTGAAGACAAAGGTGGTCAAAATTGGATTTATAAAGAGA-A 780
||||| |||||| ||||||||||||||||||||||| || |||| || | | |||| |
Sbjct 731 GTTCCTCATACTCGGCTTGTTGAAGACAAAGGTGGTCAGAACTGGA-TT-TCACGAGACA 788
Query 781 TG-ACAAATTTAAGTTTCCTGGTGGTGGTACTCAGTTTATACACGGAGCTGATCAGTACT 839
| |||| || ||||||||||| |||||||| |||||||| || || |||||||||||||
Sbjct 789 AGAACAAGTTCAAGTTTCCTGGAGGTGGTACACAGTTTATTCATGGGGCTGATCAGTACT 848
Query 840 TGGATCAGATCTCTCAGATGATTCCTGATATTAGC-TTTGGTAACCATA-CACGAGTTGT 897
|||| ||||| ||| ||||| || ||||||| | | ||||| || |||| | | ||||
Sbjct 849 TGGACCAGATGTCTAAGATGGTTTCTGATATCA-CGTTTGGCAAGCATATTA-GGGTTGC 906
Query 898 TCTTGACATTGGATGTGGTGTGGCAAGTTTTGGTGCCTACT-TAATGTCACGAAATGTCT 956
| | || |||| ||||||||||| |||||||| || || | || ||| || ||||||
Sbjct 907 TATGGATGTTGGTTGTGGTGTGGCGAGTTTTGGCGCTTA-TCTATTGTTTCGCGATGTCT 965
Query 957 TGACTA-TGTCTATAGCTCCAAAAGATGTTCACGAGAACCAGATACAGTTTGCTCTTGAG 1015
|||| | ||||| | || ||||||||||| ||||||||||| || || ||||||||||||
Sbjct 966 TGAC-AGTGTCTGTTGCACCAAAAGATGTCCACGAGAACCAAATTCAATTTGCTCTTGAG 1024
Query 1016 CGTGGTGTTCCTGCAATGGTGGCAGCATTCACAACACGGAGATTGTTGTATCCAAGCCAA 1075
|||||||| ||||| |||| ||||||||| | ||| || | ||||| || |||||||||
Sbjct 1025 CGTGGTGTGCCTGCTATGGCGGCAGCATTTGCTACAAGGCGTTTGTTATACCCAAGCCAA 1084
Query 1076 GCTTTTGAT-TTGGTACATTGTTCAAGATGTAGAATCAACTGGACTCGTGATGATGGGAT 1134
||||||||| || | ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1085 GCTTTTGATCTT-ATTCATTGTTCACGATGTAGAATCAACTGGACTCGTGATGATGGAAT 1143
Query 1135 CCTGCTCCTTGAAGTT-AATAGGATGCTTCGTGCCGGAGGATATTTTGTTTGGGCAGCAC 1193
|||||||||| | | ||||| ||||| || || ||||||||||||| |||||| ||||
Sbjct 1144 TTTGCTCCTTGA-GATCAATAGAATGCTGCGCGCTGGAGGATATTTTGCTTGGGCTGCAC 1202
Query 1194 AACCTGTATATAAGCATGAAAAGGCCTTGGAAGAACAGTGGGA-AGAGATGCTAAACCTG 1252
| ||||| |||||||||||| || ||||||||||| ||| | ||| ||||| || ||
Sbjct 1203 AGCCTGTTTATAAGCATGAACCCGCTTTGGAAGAACAATGG-ACAGAAATGCTGAATCTT 1261
Query 1253 ACCACTAGGCTGTGCTGGGTTCTTG-TAAAGAAGGAAGGATATATAGCTATCTGGCAGAA 1311
|| ||||| || |||||| ||| |||||||||||||||| | || |||||||||||
Sbjct 1262 ACTACTAGCCTTTGCTGGAAA-TTGGTAAAGAAGGAAGGATACGTTGCAATCTGGCAGAA 1320
Query 1312 GCCTGTAAATAAC-ACTTGTTACCTAAGTCGTG-GTGCTGGAG-TCAG--TCCTCCTT-T 1365
|||| | || ||| ||| |||| | ||||||| | ||||| | | | ||||| || |
Sbjct 1321 GCCTTTCAACAACGACT-GTTATTTGAGTCGTGAG-GCTGGGGCTAAACCTCCTCTTTGT 1378
Query 1366 G-TGCAATTCTGAAGATGACCCAGATAATGTTTGGTACGTGGATCTGAAGGCATGCATCA 1424
| || ||| |||| |||||| ||||||||||||||| ||||||| | |||||||
Sbjct 1379 GATG-AAT-CTGA---TGACCCCGATAATGTTTGGTACACAAATCTGAAACCTTGCATCA 1433
Query 1425 CTAGAATTGAAGAAAATGGATATGGAGCAAATCTTGCTCCTT--GGCCAGCTCGTTTAC- 1481
| | || || ||||||||||||| ||| | | |||| |||| || || | |
Sbjct 1434 GTCGCATACCTGAGAATGGATATGGAGGAAAGGTC-C-CCTTATGGCCTGCCCGCCTGCA 1491
Query 1482 TGACCCCACCGGATAGGCTGCAGACAATACAAATT-GATTCATACATAGCCCGAAAAGAG 1540
| || ||||| |||||||||||||| ||| ||||| ||||| ||||| || | ||||||
Sbjct 1492 T-ACTCCACCTGATAGGCTGCAGACGATA-AAATTTGATTCCTACATTGCTAGGAAAGAG 1549
Query 1541 CTATTTGTAGCC-GAATCAAAGTACTGGAAAGAAATAATATCAA--ACTATGTAAATGCC 1597
||||| || | |||||||| || ||||| |||||||| | | ||||| |||
Sbjct 1550 CTATTCA-AGGCAGAATCAAAATATTGGAATGAAATAAT-TGGGGGA-TATGTTCGCGCC 1606
Query 1598 CT-ACACTGGAAGCAGATAGGA-CTCAGAAATGTCTTGGACATGAGAGCTGGATTTGGCG 1655
| | | ||||| |||| | | || |||||||| |||||||||||||| || |||||||
Sbjct 1607 TTGAAA-TGGAAAAAGAT-GAAACTAAGAAATGTTTTGGACATGAGAGCAGGCTTTGGCG 1664
Query 1656 GATTTGCAGCTGCATTAGCTGAGC-TAAAGGTTGACTGCTGGGTTCTTAAC-GTCATCCC 1713
|||||||||||||| || ||| | |||| | || ||||||||||| || || | ||
Sbjct 1665 GATTTGCAGCTGCACTAAATGATCATAAAC-TCGATTGCTGGGTTCT-AAGTGTGGTTCC 1722
Query 1714 AGTGAGTGGTCCCAACACATTGCCTGTTATATATGACCGTGGACTGCTT-GGAGTTATGC 1772
|| ||||| || |||||||||||||| || ||||||||||||||| || ||||||||||
Sbjct 1723 TGTCAGTGGGCCTAACACATTGCCTGTCATTTATGACCGTGGACTG-TTAGGAGTTATGC 1781
Query 1773 ACGATTGGTGTGAACCTTTTGATACTTACCCAAGAACCTACGATTTGCTG-CATGC-TGC 1830
| |||||||||||||| |||||||| |||||| | || || || || || ||||| | |
Sbjct 1782 ATGATTGGTGTGAACCATTTGATACATACCCACGGACATATGACTT-CTTACATGCCT-C 1839
Query 1831 GGGTCTGTTTTCCATTGAAAGAAAAAGATGCAACATGACAACAATGAT-GCTAGAGATGG 1889
|| || || || || || || |||||||| | ||| |||| || || | |||||||||
Sbjct 1840 TGGACTCTTCTCAATCGAGAGGAAAAGATGTGAGATGTCAACCAT-ATTGTTAGAGATGG 1898
Query 1890 ACCGGATTTTAAGACCTGGAGGACGTGTATACAT-ACGGGACACAATCAATGTAACG-AG 1947
|| |||| || ||||| || ||| | | |||||| | |||| |||| |||| | | |
Sbjct 1899 ACAGGATATTGAGACCCGGTGGAAGAGCATACATTA-GGGATTCAATTGATGTTATGGA- 1956
Query 1948 TGAGCTTCAAGAGATTGGAAACGCAATGAGGT-GGCACACGAGCT-TACGTGAAAC-TGC 2004
||| ||||||| || ||| || ||| ||| |||| || || | ||||| || | |
Sbjct 1957 TGAAATTCAAGAAATCACAAAGGCTATG-GGTTGGCATACTT-CTCTGCGTGACACATCC 2014
Query 2005 TGAAGGACCTCACTCAAGTTACAGGGTTCTCTTATGTGAGAAGCG 2049
|| || |||||| ||||||||||| |||| ||||||||||||
Sbjct 2015 -GAGGGTCCTCACGCAAGTTACAGGATTCTAACATGTGAGAAGCG 2058
> Ahg927852 jgi|Araly1|927852|scaffold_300309.1
Length=197
Score = 220 bits (119), Expect = 3e-56
Identities = 141/152 (93%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 289 TCACCCGATTTTGCCTCCGTCTTTGTCACCACCGCCGCCGCCAGATTCTGTTGAGTTGAA 348
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1 TCACCCGGTTTTGGCTCCGTCTATGTCACCACCGCCGCCGCCAGATTCTGTTGAGCTGAC 60
Query 349 GGTGTTTGGAATCGTTAATGAGAACGGAACAATGTCTGATGAGTTTCAGATTGGTGATTA 408
||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| | |||
Sbjct 61 GGTGTTTGGGATCGTTAATGAGAACGGAAGAATGTCTGATGAGTTCCAGATTGGGGGTTA 120
Query 409 CGACGTTGAGTCGGCGGAGACGTTGGGGAATC 440
||||| ||||||||||||||||||||||||||
Sbjct 121 CGACGCTGAGTCGGCGGAGACGTTGGGGAATC 152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87074300070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5