BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06060.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487407 jgi|Araly1|487407|fgenesh2_kg.6__541__AT5G06060.1 1375 0.0
> Ahg487407 jgi|Araly1|487407|fgenesh2_kg.6__541__AT5G06060.1
Length=896
Score = 1375 bits (744), Expect = 0.0
Identities = 853/904 (94%), Gaps = 14/904 (2%)
Strand=Plus/Plus
Query 1 ACTCACACATCCAC-AAAA-AGAG--AGTTAGAGATTCCAAGGAGGAGAGTGCGTGAGCG 56
|||||||||||||| |||| |||| ||| |||||||||||||| | || |||||||
Sbjct 1 ACTCACACATCCACAAAAAGAGAGACAGTGAGAGATTCCAAGGA-G-GA----GTGAGCG 54
Query 57 TGACAATGGAAACTGACAAAAGATGGTCTCTCGCCGGGAAAACAGCTCTGGTAACCGGCG 116
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 55 TGACAATGGAAACTGACAAAAGATGGTCTCTCGCCGGAAAAACAGCTCTGGTTACCGGCG 114
Query 117 GGACTCGTGGAATCGGGAGAGCAGTTGTAGAGGAACTAGCAAAATTTGGTGCAAAAGTTC 176
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 115 GGACTCGTGGAATCGGGAGAGCAGTAGTGGAGGAACTAGCAAAATTTGGTGCAAAAGTTC 174
Query 177 ATACTTGTTCAAGGAACCAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAAGCGAATG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 175 ATACTTGTTCAAGGAACCAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAATCCAATG 234
Query 237 GTTTAGTCGTGTCTGGTTCGGTTTGTGATGCTTCGGTTAGGGATCAGAGGGAGAAGTTGA 296
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 GTTTAGTGGTGTCTGGTTCGGTTTGTGATGCTTCGGTTAGGGATCAAAGGGAGAAGTTGA 294
Query 297 TTCAGGAAGCTTCTTCTGCCTTCAGTGGCAAGCTCAACATCCTTATAAACAATGTTGGAA 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 295 TTCAGGAAGCTTCTTCTGCCTTCAGCGGCAAGCTCAACATCCTTATAAACAATGTTGGAA 354
Query 357 CTAATGTCAGGAAACCAACAGTTGAATACTCAAGCGAGGAATATGCCAAAATCATGTCGA 416
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 355 CTAATGTCAGGAAACCAACAGTTGAATACTCAAGCGAGGAATATGCAAAAATCATGACGA 414
Query 417 CCAACTTAGAATCCGCTTTCCATTTATCTCAAATTGCTCATCCTCTTCTAAAAGCATCTG 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 415 CCAACTTAGAATCCGCTTTCCATTTATCCCAAATTGCTCATCCTCTTCTAAAAGCATCTG 474
Query 477 GTGTCGGAAGCATTGTGTTCATCTCCTCTGTAGCTGGCCTGGTGCATCTT-AGCAGTGGA 535
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 475 GTGTCGGAAGCATTGTGTTCATCTCCTCTGTAGCTGGCCTGGTGCATCTTCAA-AGTGGA 533
Query 536 TCTATCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAAATCTAGCTTGCGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCTATCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAAATCTAGCTTGCGAG 593
Query 596 TGGGCAAGCGACAACATCAGAACCAATTGCGTGGCGCCATGGTACATCAAGACCTCACTT 655
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 TGGGCAAGAGACAACATCAGAACCAATTGCGTGGCGCCGTGGTACATCAAGACCTCACTT 653
Query 656 GTGGAAACGCTACTTGAGAAGAAAGAATTTGTGGAGGCTGTAGTTTCAAGGACCCCACTT 715
|||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||
Sbjct 654 GTGGAAACGCTACTTGAGAAGAAAGATTTTGTTGAGGCGGTAGTTTCACGGACTCCACTT 713
Query 716 GGGCGCGTTGGAGAACCAGAGGAAGTCT-CATCGTTGGTTGCCTTTCTCTGCCTTCCCGC 774
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 714 GGGCGCGTTGGAGAACCAGAGGAAGT-TGCATCGCTGGTTGCCTTTCTCTGCCTTCCCGC 772
Query 775 ATCATCTTATATTACCGGACAGGTCATATCCGTCGATGGAGGATTCACTGTCAACGGTTT 834
| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 773 AGCATCTTACATTACCGGACAGGTCATATCCGTCGATGGAGGATTGACCGTCAACGGTTT 832
Query 835 TAGCTATGCTATGAAGCCTTAATCTCGAATCGCAACATTACTAATAAAGCAAGAATCCTC 894
|||||| ||||| |||| |||||| || |||| |||||| ||||||||||||||||
Sbjct 833 TAGCTACACTATGTAGCCAAAATCTCTCATATCAACGTTACTAGTAAAGCAAGAATCCTC 892
Query 895 GTGA 898
||||
Sbjct 893 GTGA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5