BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06070.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487408 jgi|Araly1|487408|fgenesh2_kg.6__542__AT5G06070.1 1411 0.0
> Ahg487408 jgi|Araly1|487408|fgenesh2_kg.6__542__AT5G06070.1
Length=934
Score = 1411 bits (764), Expect = 0.0
Identities = 891/950 (94%), Gaps = 18/950 (2%)
Strand=Plus/Plus
Query 70 AAATCTTACATATGATGGATAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGG 129
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCTTACATATGATGGAGAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGG 60
Query 130 TGACGAGGCCATCTTCGGATGGGACTTTATTTTGGCCGTTTAGGGAAGAGAGAGCGTTTG 189
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 61 TTACGAGGCCATCTTCGGATGGGACATTGTTTTGGCCGTTTAGGGAAGAGAGAGCGTTTG 120
Query 190 CGTCAGCTGAGGAGTATGGCGGCGGAGGTGGTTGCATGTGGCCACCGAGGTCTTACTCAT 249
|||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||| |
Sbjct 121 CGTCAGCTGAGGAGTATGGCGGTGGAGGCGCTTGCATGTGGCCGCCGAGGTCTTACTCGT 180
Query 250 GCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTC 240
Query 310 ATCGAAGAGACCGAGCTCGACTCAAACAACAATCATTATCACCTTCATCAACTGACCAAG 369
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 ATCGAAGAGACCGAGCTAGACTCAAACAGCAATCATTATCACCTTCATCAACTGACCAAG 300
Query 370 CCACACCTCCTGAATGTGATCGTCAACAACAAGTTCTTGATGTGGGATCAAAGGTTCTTG 429
|||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 301 CCACACATCCTGAATATGATCGTCAACAACAAGTTCTTGATGTGGGGTCAAAGGTTCTCG 360
Query 430 TTCAAGAAGAAACAAGAAAGCCTAACGGAACCAAGAGGGAGATAAGTGATGTTTGTAATA 489
| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 361 TCCAAGAAGAAACAAGAAAGCCTAATGGAACTAAAAGGGAGATAAGTGATGTTTGTAATA 420
Query 490 ACAACGTTTTAGAAAGTTCTATGAAAAGATATGAACATGACAATGGTGAAGTCAAGACTG 549
| || |||||||||||||||||| || ||||||| |||||||||| ||||||||||||||
Sbjct 421 ATAATGTTTTAGAAAGTTCTATGCAACGATATGAGCATGACAATGATGAAGTCAAGACTG 480
Query 550 ACTTATCGGTCGGTCTACTGAGTACTGAGTTTGATCCTCGGAAGAAGCAACTAATCAACG 609
|||| || ||||||||||| ||| |||||||||||||||||||||| ||||||||||| |
Sbjct 481 ACTTGTCAGTCGGTCTACTAAGTTCTGAGTTTGATCCTCGGAAGAAACAACTAATCAAAG 540
Query 610 GATCATCTTCGTCATGGAAGAGGGCAAAGACGGATGTGTCAAGATTTCCAATGATGTTAG 669
|||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 541 GATCATCTTCATCATGGAAGAGGGCAAAGACGGATGTGGCAAGATTTCCGATGATGTTAG 600
Query 670 GGTTGGTCATTGGAATTTCCGAGATCAACGGCCATCATGAGGAGTTGGATCTTGAGCTAA 729
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 601 GGTTGGTCATTGGAGTTTCCAAGATCAACGGTCATCATGAGGAGTTGGATCTTGAGCTAA 660
Query 730 GGCTAGGAGCTGATCCGCCTAAGGTTAACTAGCTTAAGTAATTAAAAA-GTAATAATAGT 788
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GGCTAGGAGCTGATCCGCCTAAGGTTAACTAGCTTAAGTAATTAAAAAAGTAATAATAGT 720
Query 789 TAATGTGATTGCCAAAAAGAAGAAGTTAAACTGTCTCTAATCTCAAGAGTGAAAAGTGAG 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 721 TAATGTGATTGCCAAAAAGAAGAAGTTAAACTGTCTCTAATCTCAAGAGTGAAACGAGAG 780
Query 849 TAGGTTCTGTAGTGTTGGCTTTGATATAGTAATATATTTATCTTATGGATAAAGTCAACA 908
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 781 TAGGTTCTGTAGTGTTGGCTTTGATATAGTAATATTTTTATCTTATGGAAAAAGTCAACA 840
Query 909 CGTATAGTCTTTGCTCTAATTCATAAGACAAT-TAAAATATTTTGATTGTTTCTTTTTCT 967
|||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 841 CGTATAGTCTTTGCTCTAATTCATAAGACAATCTAAA-TATTTT--TT------------ 885
Query 968 TACGAATGATGTAACTTTCTCACGATTTGGTTTTCAATATTTATGCCTAT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 -ACGAATGATGTAACTTTCTCACGATTTGGTTTTCAATATTTATGCCTAT 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5