BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06080.1
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892531 jgi|Araly1|892531|Al_scaffold_0006_527 846 0.0
> Ahg892531 jgi|Araly1|892531|Al_scaffold_0006_527
Length=549
Score = 846 bits (458), Expect = 0.0
Identities = 509/534 (95%), Gaps = 2/534 (0%)
Strand=Plus/Plus
Query 41 ATGGCAAGTCATGGATCATCTTGTGGAGCATGCAAGTTTCTAAGGAGGAAATGCAACCGC 100
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCAGGTCATGGATCATCTTGTGGAGCATGCAAGTTCCTAAGGAGGAAATGCAACCGC 60
Query 101 GACTGCGTCTTCTCGCCTTACTTCAGCTACGAACAAGCCTCTTCCCATTTCGCAGCGGTT 160
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTGTGTCTTCTCGCCTTACTTCAGCTACGAACAAGCCTCTTCCCATTTCGCAGCGGTC 120
Query 161 CACAAAGTCTTCGGCGCAAGTAATGTCTCTAAACATTTGCTTCATTTGCCTCAACATCAA 220
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CACAAAGTCTTCGGCGCAAGCAATGTCTCTAAACATTTGCTTCATTTGCCTCTACATCAA 180
Query 221 AGAAACATCGCTGCTATCACCATCTCCTACGAGGCTCTCTCTCGCATGCGTGATCCTGTT 280
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAAGCGTCGCTGCTATCACCATCTCCTACGAGGCTCTCTCTCGCATGCGTGATCCTGTC 240
Query 281 TATGGCTGCGTTGCTCACATCTTCGCTCTTCATCAACAGGTTGTGACTTTGCAAGAAGAG 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TATGGCTGCGTTGCTCACATCTTCGCTCTTCATCAACAGGTTGTGACTTTGCAAGAGGAA 300
Query 341 ATTGAGTTTCTCGGGTCACAGATGAAGAATTTTTCATACTCTAATCAAAACGGATCACAA 400
||||||||||| || |||||||||| |||||| |||||||||| |||||| |||||||||
Sbjct 301 ATTGAGTTTCTTGGATCACAGATGACGAATTTCTCATACTCTACTCAAAATGGATCACAA 360
Query 401 CTTAACAACATACCGGAGTTTGTGAATCAGATGACTATGGCCACGACCAATTTCGTCGAC 460
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 361 CTTAACAACATACCGGAGTTTGTGAATCAGATGACTGTGGACACGACCAATTTCGTCGAT 420
Query 461 GAGAGTGTTTTGAACAATGCCGACGGAAGAAACTGC-TATGATGGGTTCTTCACGAACTC 519
||||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 421 GAGAGTGTTTTAAACAATGTCGACGGAAGAAACTGCCT-TGATGGGTTCTTCACGAACTC 479
Query 520 AGAGGAAATGCTCGTGAATCATCAATGGCTCCAGAACATGGATTATTATTACTA 573
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGAGGAAATGCTCGTGAATCATCAATGGCTTCAGAACATGGATTATTATTACTA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20985573950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5