BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06090.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349873 jgi|Araly1|349873|fgenesh1_pg.C_scaffold_6000466 2307 0.0
Ahg478480 jgi|Araly1|478480|fgenesh2_kg.3__1181__AT3G11430.1 1011 0.0
> Ahg349873 jgi|Araly1|349873|fgenesh1_pg.C_scaffold_6000466
Length=1500
Score = 2307 bits (1249), Expect = 0.0
Identities = 1420/1504 (94%), Gaps = 5/1504 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCATCAACTACAACATCGTATTCAGTTGTGTCGGAGCTAGAAGGAACACTACTG 60
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCATCGACT---ACATCGTATTCAGTTGTGTCGGAGCTAGAAGGAACACTACTG 57
Query 61 AAAAACCCAAAACCCTTCGCCTACTTCATGCTCGTAGCTTTCGAGGCTTCAGGACTAATC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAAAACCCAAAACCCTTCGCTTACTTCATGCTCGTAGCTTTCGAGGCTTCAGGACTAATC 117
Query 121 CGTTTTGCGACCTTGCTGTTTCTCTGGCCTATCATAGCACTCCTTGACGTTTTGGGCTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGTTTTGCGACCTTGCTGTTTCTCTGGCCTATCATAGCACTCCTTGACGTTTTGGGCTAC 177
Query 181 AGAAACGGTAGCCTTAAGTTAATGATCTTCGTCGCAACGGCCGGTTTGCACGAATCAGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGAAACGGTAGCCTTAAGTTAATGATCTTCGTCGCAACGGCCGGTTTGCACGAATCAGAG 237
Query 241 ATTGAATCAGTGGCTCGAGCGGTTCTTCCCAAATTCTTCATGGACGATATCAGCATGGAC 300
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 238 ATTGAATCAGTGGCTCGAGCCGTTCTTCCCAAATTCTACATGGACGATGTCAGCATGGAC 297
Query 301 GCTTGGAGGGCGTTTGGTTCGTGCGATAAGAGAGTCGTTGTGACAAGAATGCCACGAGTT 360
||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 298 GCTTGGAAAGCGTTTGGTTCCTGCGATAAGAGAGTCGTTCTGACAAGAATGCCACGAGTT 357
Query 361 ATGGTGGAGAGATTCGCTAAGGATCATCTTAGCGCCGATGAGGTCATCGGTACAGAGATT 420
||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 358 ATGGTTGAGAGATTCGCCAAGGACCATCTTAGAGCCGATGAGGTCATCGGTACGGAGATT 417
Query 421 GTCGTAAACCGTTTCGGTTATGCTACCGGTTTGATTCAGGAAACCAATGTGGACCAATCT 480
|||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 418 GTCGTAAACCGTTTTGGTTATGCTACTGGTTTAATTCAAGAAACCAATGTGGACCAATCT 477
Query 481 GTTTTCAACAGTGTGGCTAACTTGTTTGTGGATCGGAGACCTCAACTAGGTCTAGGACGA 540
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 478 GTTTTCAACAGTGTGGCTAACTTGTTTGTTGATCGAAGACCTCAACTAGGTCTAGGACGA 537
Query 541 CATATTATCTCGGATTCTCCAACTTTCCTATCTTTATGTGAGGAGCAAGTTCATGCACCA 600
|| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 538 CAGATTACCTCGGATTCTCCTACTTTCCTATCGTTATGTGAGGAGCAAGTTCATGCACCG 597
Query 601 GTTCCATCGAACTACAACGGTCATAACCAGCGGCTACATGTGCAGCCGTTACCAGTTATC 660
|||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 598 GTTCCATCAAACTACAACGGTCATATCCAGCGGCTACATGTGCAGCCGTTACCGGTTATT 657
Query 661 TTCCACGATGGACGACTTGTGAAGCTACCAACACCAGCCACCGCACT-CATCATCCTTCT 719
|||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||
Sbjct 658 TTCCACGATGGACGACTTGTGAAGCTGCCGACACCAGCCACCGCACTTC-TCATCCTTCT 716
Query 720 TTGGATCCCCTTTGGAATAATTCTAGCCATGATTCGGATATTCGTTGGGTTCTTACTTCC 779
|||||||||||| || ||||| || ||| |||||||||| |||||||||||||| || ||
Sbjct 717 TTGGATCCCCTTCGGTATAATCCTGGCCGTGATTCGGATCTTCGTTGGGTTCTTGCTCCC 776
Query 780 ATTATGGGCCATACCTTACGTCTCACGGATATTCAACACTCGATTCATCGTAAAAGGAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTATGGGCCATACCTTACGTCTCACGGATATTCAACACTCGATTCATCGTAAAAGGAAA 836
Query 840 GCCTCCGGCACAAGCAACCACCGGAAACCCAGGCGTACTATTCGTATGCACTCATAGAAC 899
||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 GCCTCCGGCACCAGCAACCCCCGGAAAACCAGGCGTACTATTCGTATGCACTCATAGAAC 896
Query 900 TCTAATGGATCCGGTCGTATTATCCTATGTGCTCGGACGTAGCATTCCAGCTGTTACCTA 959
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 897 CCTAATGGATCCGGTCGTATTATCCTATGTACTCGGACGTAGCATCCCAGCCGTTACCTA 956
Query 960 CTCTATTTCTCGTTTATCCGAGATCCTATCTCCGATTCCAACCTTTAGGTTAACTAGAAT 1019
||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 957 CTCCATTTCTCGATTATCCGAGATTCTATCTCCGATTCCAACCTTCAGGTTAACTAGAAT 1016
Query 1020 TCGAGATGTAGATGCGGAGATGATCAAGAAAGAACTGTCTAATGGGGACTTAGTGGTATA 1079
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCGAGATGTTGACGCCGAGATGATCAAGAAAGAACTGTCTAATGGGGACTTAGTGGTATA 1076
Query 1080 TCCCGAGGGAACCACTTGTCGCGAGCCGTTTTTGCTGAGATTTAGCGCGCTTTTCGCAGA 1139
||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1077 TCCGGAGGGAACCACTTGTCGCGAGCCATTTTTGCTGAGATTTAGTGCTCTTTTCGCAGA 1136
Query 1140 ATTAACCGACAATATTGTGCCCGTGGCAATGAACTACAGAGTTGGATTCTTTCATGCGAC 1199
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1137 ATTAACGGACAATATTGTGCCAGTGGCAATGAACTATAGAGTAGGATTCTTTCATGCGAC 1196
Query 1200 TACCGCTAGAGGCTGGAAAGGTTTGGACCCGATCTTCTTTTTCATGAACCCGAGACCGGT 1259
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1197 TACTGCTAGAGGCTGGAAAGGTTTAGACCCCATCTTCTTTTTCATGAACCCGAGACCGGT 1256
Query 1260 TTATGAGGTGACGTTCTTGAACCAGCTCGAGGTGGAGGCGACGTGTTCGTCAGGGAAGAG 1319
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1257 TTATGAGGTGACGTTCTTGAACCAGCTCGAAGTGGAGGCTACGTGTTCGTCAGGGAAGAG 1316
Query 1320 CCCTTATGACGTGGCTAACTATGTACAGAGAATCTTGGCAGCTACGTTAGGCTTTGAGTG 1379
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 CCCTTATGACGTGGCCAACTATGTACAGAGAATCTTGGCCGCTACGTTAGGCTTTGAGTG 1376
Query 1380 TACTAACTTTACGAGGAAGGATAAGTATAGAGTTCTCGCAGGGAACGACGGAACCGTGTC 1439
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1377 TACTAACTTCACGAGGAAGGATAAGTACAGAGTTCTCGCAGGAAACGACGGAACCGTGTC 1436
Query 1440 GTATTTGTCGTTTCTCGATCAAGTCAAGAAGGTCGTCACCACTTTCAAACCTTTTTTGCA 1499
||| ||||| |||||||| ||||||||||||||| ||||||| ||||| ||||| || ||
Sbjct 1437 GTACTTGTCATTTCTCGACCAAGTCAAGAAGGTCATCACCACATTCAAGCCTTTCTTCCA 1496
Query 1500 TTAA 1503
||||
Sbjct 1497 TTAA 1500
> Ahg478480 jgi|Araly1|478480|fgenesh2_kg.3__1181__AT3G11430.1
Length=1822
Score = 1011 bits (547), Expect = 0.0
Identities = 1193/1505 (79%), Gaps = 44/1505 (3%)
Strand=Plus/Plus
Query 19 ACATCGTATTCAGTTGTGTCGGAGCTAGAAGGAACACTACTGAAAAACCCAAAACCCTTC 78
||| ||||||| || ||||| ||| | ||||||||| ||||||| ||| || | | |||
Sbjct 174 ACACCGTATTCGGTCGTGTCAGAGTTTGAAGGAACAATACTGAAGAACGCAGATTCATTC 233
Query 79 GCCTACTTCATGCTCGTAGCTTTCGAGGCTTCAGGACTAATCCGTTTTGCGACCTTGCTG 138
||||||||||||||||||| ||||| || || || ||||| ||||| || | |||| ||
Sbjct 234 TCCTACTTCATGCTCGTAGCCTTCGAAGCATCTGGTCTAATTCGTTTCGCTATCTTGTTG 293
Query 139 TTTCTCTGGCCTATCAT-AGCACTCCTTGACGTTTTGGGCTACAGAAACGGTAGC-CTTA 196
||||| ||||| || || | |||||||||||||||| |||||| |||| | || || |
Sbjct 294 TTTCTATGGCCCATAATCA-CACTCCTTGACGTTTTCAGCTACAAAAAC-GCCGCTCTCA 351
Query 197 AGTTAATGATCTTCGTCGCAACGGCCGGTTTGCACGAATCAGAGATTGAATCAGTGGCTC 256
|| | ||||| || || || || | ||||| | ||| ||||||| ||||| ||||||
Sbjct 352 AGCTCATGATTTTTGTAGCCACTGTTGGTTTACGTGAACCAGAGATCGAATCGGTGGCTA 411
Query 257 GAGCGGTTCTTCCCAAA-TTCTTCATGGACGATATCAGCATGGACGCTTGGAGGGCGTTT 315
|||| | || | ||||| |||| |||||| || | ||||||||| | ||||||| |||
Sbjct 412 GAGCCG-TCCTGCCAAAGTTCTACATGGATGACGTAAGCATGGACACGTGGAGGGTTTTT 470
Query 316 GGTTCGTGCGATAAGAGAGTCGTTGTGACAAGAATGCCACGAGTTATGGTGGAGAGATTC 375
| ||||| | ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 471 AGCTCGTGTAAAAAGAGGGTCGTGGTGACAAGAATGCCTCGAGTGATGGTGGAGAGGTTT 530
Query 376 GCTAAGGATCATCTTAGCGCCGATGAGGTCATCGGTACAGAGATTG-TCGTAAACCGTTT 434
|||||||| |||||||| ||||||| |||||||||||| || | || | || ||||| ||
Sbjct 531 GCTAAGGACCATCTTAGAGCCGATGTGGTCATCGGTACCGA-AGTGATTGTGAACCGGTT 589
Query 435 CGGTTATGCT-ACCGGTTTGATTCAG-GAAACCAATGTGGACCAATCTGTTTTCAACAGT 492
||||| || | ||||||||||| | | |||||| |||| || || |||| ||| ||| ||
Sbjct 590 CGGTTTTG-TCACCGGTTTGATAC-GTGAAACCGATGTTGATCAGTCTGCTTTGAACCGT 647
Query 493 GTGGCTAACTTGTTTG-TGGATCGGAGACCTCAACTAGGTCTAGGACGACATATTATCTC 551
|| ||||| ||||||| ||| || ||| |||||||||||||| ||| ||| | | |
Sbjct 648 GTCGCTAATTTGTTTGTTGG-TCAGAGGCCTCAACTAGGTCTTGGAAGACCGGCTGTGAC 706
Query 552 GGATTCTCCAACTTTCCTATCTTTATGTGAGGAGCA-AGTTCATGCACCAGTTCCATCGA 610
| |||| |||||||| |||| |||||||||||||| | ||| ||||||| | || ||
Sbjct 707 CGCTTCTACAACTTTCTTATCGTTATGTGAGGAGCATA-TTCCTGCACCAATCCCGGAGA 765
Query 611 ACTACAACGGTC-ATAACCAGCGGCTACATG-TGCAG-CC-GTTACCAGTTATCTTCCAC 666
|||||||| | |||||| | || || | | | | || || || || || || |||
Sbjct 766 ACTACAAC-CACGGTAACCAACAACTTCA-GCTAC-GTCCACTT-CCGGTGATATTTCAC 821
Query 667 GATGGACGACTTGTGAAGCTACCAACACCAGCCACCGCACTCATCATCCTTCTTTGGATC 726
|| |||||||| ||||||| ||||| ||||||||||| ||| ||||||| |||||||||
Sbjct 822 GACGGACGACTAGTGAAGCGGCCAACGCCAGCCACCGCTCTCCTCATCCTCCTTTGGATC 881
Query 727 CC-CTTTGGAATAATTCTAGCCATGATTCGGAT-ATTCGTTGG-GTTCTTACTTCCATTA 783
|| | |||| || | |||||| |||| ||||| ||| |||| | | | || |||||
Sbjct 882 CCAC-TTGGGATCACACTAGCCGTGATCCGGATCTTTC-TTGGAG-CCATCCTCCCATTG 938
Query 784 TGGGCCATACCTTACGTCTCACGGATATTCAACACTCGAT-TCATCGTAAAAGGAAAGCC 842
||||||| |||||||||||| | |||||| | | || ||||||| ||||| |||||
Sbjct 939 TGGGCCACACCTTACGTCTCTCAGATATTTGGC-GGCCATATCATCGTCAAAGGCAAGCC 997
Query 843 TCCGGCA-CAAGCAACCACCGG-AAACCCAGGCGTACTATTCGTATGCACTCATAGAACT 900
||| || | | | | || ||| || ||||| || || || || |||||||||||
Sbjct 998 TCC-TCAGCCACCGGTTGCTGGAAAATCC-GGCGTGCTCTTTGTGTGTACTCATAGAACC 1055
Query 901 CTAATGGATCCGGTCGTATTATCCTATGTGCTCGGACGTAGCATTCCAGCTGTTACCTAC 960
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1056 CTAATGGACCCGGTGGTATTATCCTATGTGCTCGGACGTAGCATCCCAGCCGTTACTTAC 1115
Query 961 TCTATTTCTCGTTTATCCGAGATCCTATCTCCGATTCCAACCTTTAGGTTAACTAGAATT 1020
|| ||||| || ||||| |||||| ||||||||||||||||| | | || || |||||
Sbjct 1116 TCGATTTCGCGGTTATCAGAGATCTTATCTCCGATTCCAACCGTCCGATTGACAAGAATC 1175
Query 1021 CGAGATGTAGATGCGGAGATGATCAAGA-AAGAACTGTCTAATGGGGA-CTTAGTGGTAT 1078
||||||||||| |||| | |||||| | || | ||||| || || || || |||||| |
Sbjct 1176 CGAGATGTAGACGCGGCTAAGATCAA-ACAACAGCTGTCCAAAGGAGATCT-AGTGGTCT 1233
Query 1079 ATCCCGAGGGAACCACTTGTCGCGAGCCGTTTTTGCTGAGATTTAGCGCGCTTTTCGCAG 1138
||| ||||||||||||||||| || ||||||||| | ||||| ||||| |||||||| |
Sbjct 1234 GTCCTGAGGGAACCACTTGTCGTGAACCGTTTTTGTTAAGATTCAGCGCACTTTTCGCCG 1293
Query 1139 AATTAACCGACAATATTGTGCCCGTGGCAATGAACTACAGAGTTGGATTCTTTCATGCGA 1198
| ||||| || | ||||| || || || ||||| ||||||||||||||||| || ||||
Sbjct 1294 AGTTAACGGATAGGATTGTTCCGGTTGCGATGAATTACAGAGTTGGATTCTTCCACGCGA 1353
Query 1199 CTACCGCTAGAGGCTGGAAAGGTTTGGACCCGATCTTCTTTTTCATGAACCCGAGACCGG 1258
| || || ||||||||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 1354 CCACAGCGAGAGGCTGGAAAGGTTTAGACCCGATTTTCTTCTTCATGAACCCAAGACCGG 1413
Query 1259 TTTATGAGGTGACGTTCTTGAACCAGCT-CG-AGGTGGAGGCGACGTGTTCGTCAGGGAA 1316
|||| ||||| ||||||||||| ||||| | | ||||||| || |||||||| |||||
Sbjct 1414 TTTACGAGGTTACGTTCTTGAATCAGCTTCCTA--TGGAGGCAACATGTTCGTCCGGGAA 1471
Query 1317 GAGCCCTTATGACGTGGCTAACTATGTACAGAGAATCTTGGCAGCTACGTTAGGCTTTGA 1376
|||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1472 GAGCCCGCATGACGTGGCAAACTATGTTCAGAGAATCTTGGCGGCTACGTTAGGGTTTGA 1531
Query 1377 GTGTACTAACTTTACGAGGAAGGATAAGTATAGAGTTCTCGCAGGGAACGACGGAACCGT 1436
||| || ||||| || || || || |||||||| |||||||| || ||||| ||||| ||
Sbjct 1532 GTGCACCAACTTCACAAGAAAAGACAAGTATAGGGTTCTCGCTGGAAACGATGGAACGGT 1591
Query 1437 GTCGTATTTGTCGTTTCTCGATCAAGTCAAGAAGGTCGTCACCACTTTCAAACCTTTTTT 1496
||||||||||||||| | || ||| | |||||||| || |||||| | |||||| |
Sbjct 1592 GTCGTATTTGTCGTTGATTGACCAATTGAAGAAGGTGGTGGGCACTTTTGAGCCTTTTCT 1651
Query 1497 GCATT 1501
||||
Sbjct 1652 CCATT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5