BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06100.2
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487412 jgi|Araly1|487412|fgenesh2_kg.6__546__AT5G06100.3 2662 0.0
Ahg478481 jgi|Araly1|478481|fgenesh2_kg.3__1182__AT3G11440.1 776 0.0
> Ahg487412 jgi|Araly1|487412|fgenesh2_kg.6__546__AT5G06100.3
Length=1819
Score = 2662 bits (1441), Expect = 0.0
Identities = 1681/1792 (94%), Gaps = 35/1792 (2%)
Strand=Plus/Plus
Query 55 TCCTTCCATTTCCACTCGATGTTCAGCTGCCCAAGCTAAGCTCGGATCTCTATCCAGCTT 114
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 33 TCCTTCCATTTCCACTCGATGTTCAGCTGCCCAAGCTAAGCTCGGATCTCAATCCAGCTT 92
Query 115 TGGTATCCAGCGTCTGACAG-TTCTGGA------------TT--TTGttt----ttt-tt 154
||||| ||||||||||||| || |||| || || ||| ||| ||
Sbjct 93 CGGTATTCAGCGTCTGACAGTTTTTGGATTTGTTTTTTCTTTCCTTATTTAGGGTTTGTT 152
Query 155 tt-C--TTTC--CT-TATTTAGGGTGGGAGCTTGATGTCTAAATTGTTACT---GTCAGT 205
|| | |||| || | |||| ||||||||||||||||||||||||| || || | |
Sbjct 153 TTCCTTTTTCGTCTCTTTTTATTGTGGGAGCTTGATGTCTAAATTGTTGCTCAAGT-ACT 211
Query 206 GGTTTAATTAGAAAAGAGATGAGTTACACGAGCACTGACAGTGACCATAATGAGTCACCA 265
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GCTTTAATTAGAAAGGAGATGAGTTACACGAGCACTGACAGTGACCATAATGAGTCACCA 271
Query 266 GCTGCTGATGATAATGGAAGTGACTGCAGAAGTAGATGGGATGGTCATGCTCTCAAGAAA 325
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 272 GCTGCTGATGACAATGGAAGTGACTGCAGAAGTAGATGGGAAGGTCATGCTCTGAAGAAA 331
Query 326 GGCCCTTGGAGTTCAGCTGAAGATGATATTCTTATTGACTATGTGAATAAGCATGGTGAG 385
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 332 GGGCCATGGAGTTCTGCTGAAGATGATATTCTTATTGACTATGTGAATAAGCATGGCGAA 391
Query 386 GGTAACTGGAATGCTGTGCAGAAACACACCAGCTTGTTTCGTTGTGGTAAAAGCTGTCGT 445
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 392 GGTAACTGGAATGCTGTGCAGAGACATACGGGCTTGTTTCGTTGTGGTAAAAGCTGTCGT 451
Query 446 CTAAGATGGGCTAATCATCTGAGGCCAAATTTGAAGAAAGGAGCTTTTAGTCAAGAAGAA 505
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 452 CTAAGGTGGGCTAATCATCTGAGGCCAAATTTGAAGAAAGGAGCTTTTAGCCAAGAAGAA 511
Query 506 GAACAGCTTATCGTTGAATTGCATGCCAAGATGGGTAATAGATGGGCACGTATGGCTGCA 565
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 512 GAACAGCTTATTGTTGAATTGCATGCCAAGATGGGTAATAGATGGGCGCGTATGGCTGCG 571
Query 566 CATTTGCCTGGCCGAACGGATAATGAGATAAAGAATTATTGGAACACTCGTATCAAGAGG 625
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 572 CATTTGCCTGGCCGAACGGATAACGAGATAAAGAATTATTGGAACACTCGTATCAAGAGG 631
Query 626 CGACAACGAGCTGGTTTGCCACTTTATCCTCCTGAGATGCATGTTGAGGCACTTGAGTGG 685
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 632 CGACAACGAGCTGGTTTACCACTTTATCCTCCTGAAATGCATGTTGAAGCACTAGATTGG 691
Query 686 AGTCAAGAGTATGCCAAGAGTAGAGTTATGGGAGAAGATAGAAGACATCAAGATTTCTTG 745
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 692 AGTCAAGAGTATGCCAAGAGTAGAGTTATGGGAGAAGATAGAATACATCAAGATTTCTTG 751
Query 746 CAGCTGGGGAGTTGTGAATCTAATGTCTTCTTTGATACTCTTAATTTTACCGACATGGTA 805
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 752 CAGCTGGGGAGTTGTGAATCTAATGTCTTCTTTGATAGTCTTAACTTTACAGACATGGTA 811
Query 806 CCTGGTACTTTTGATCTAGCAGATATGACTGCCTACAAAAATATGGGTAACT-GTGCAAG 864
|||||| ||||||| ||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 812 CCTGGTGCTTTTGACCTAGCAGATATGACTGCCTACAAAAATCTGGGTAA-TGGTGCAAG 870
Query 865 TTCTCCTCGATATGAAAACTTCATGACACCAACAATCCCCTCCTCGAAGCGACTTTGGGA 924
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 871 TTCTCCTCGATATGAAAACTTCATGACACCAATAATGCCCTCCTCGAAGCGACTTTGGGA 930
Query 925 ATCTGAGTTGTTGTATCCTGGGTGTAGCAGTACCATAAAGCAAGAATTCTCGTCGCCTGA 984
|||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 931 ATCTGAATTGTTGTATCCTGGGTGTAGCAGTACCGTAAAGCAAGAATTCTTGTCGCCTGA 990
Query 985 ACAATTCCGGAACACATCTCCACAAACGATTTCCAAAACTTGCAGCTTCTCAGTTCCTTG 1044
|||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 991 ACAATTCCAGAACACATCTCCACAAAAGATTTCCAAAACTTGCAGTTTCTCAGTTCCTTG 1050
Query 1045 TGATGTTGAGCATCCTCTCTATGGAAACCGACATTCACCTGTTATGATTCCAGATAGCCA 1104
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1051 TGATGTTGAGCATCCTCTCTATGGAAACCGACATTCACCTGTTATGATTTCAGATAGCCA 1110
Query 1105 TACCCCTACGGATGGCATTGTTCCTTATTCTAAGCCCTTATATGGGGCAGTGAAGCTGGA 1164
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1111 TACCCATACGGATGGCATTGTTCCTTCTTCTAAGCCCTCATATGGGGCAGTGAAGCTGGA 1170
Query 1165 GCTCCCTTCATTCCAATATTCAGAAACAACATTTGACCAGTGGAAGAAATCGTCATCTCC 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GCTCCCTTCATTCCAATATTCAGAAACAACATTTGACCAGTGGAAGAAATCGTCATCTCC 1230
Query 1225 TCCACACTCTGATCTCCTTGATCCCTTTGATACTTACATTCAGTCTCCACCACCACCAAC 1284
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1231 TCCACACTCTGATCTTCTTGATCCCTTTGATACTTACATTCAGTCTCCACCACCACCTAC 1290
Query 1285 GGGGGGAGAAGAGTCAGATTTATATTCAAATTTTGATACTGGTCTGCTCGATATGTTGCT 1344
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1291 GGGGAGAGAAGAGTCAGATTTATATTCAAGTTTTGATACTGGTCTGCTCGATATGTTGCT 1350
Query 1345 TCTGGAAGCCAAGATCAGAAATAATAGTACAAAGAACAATTTGTACAGGAGCTGCGCTTC 1404
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1351 TCTGGAGGCCAAGATCAGAAATAATACTACAAAGAACAATTTGTACAAGAGCTGCGCTTC 1410
Query 1405 AACTATTCCATCAGCTGATCTTGGCCAGGTTACTGTATCCCAAACTAAATCCGAGGAGTT 1464
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1411 AACTATTCCATCAGCTGATCTTGGCAAGGTTACTGTGTCCCAAACTAAATCCGAGGAGTT 1470
Query 1465 TGACAATTCCCTTAAGAGCTTCTTGGTTCATTCCGAAATGTCCACACAAAATGCAGATGA 1524
|||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct 1471 TGACAATTCCCTTAAGAG-TT-T-GGTTCATTCCGAGATGTCCACACAAAATGCAGATGG 1527
Query 1525 AACTCCACCAAGGCAGAGAGaaaaaaaGCGGAAACCTCTCTTGGATATAACAAGGCCTGA 1584
|| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1528 AATTCCACCAAGGCAGAGAGAAAAAAAGCGGAAACCTCTCTTGGATATAACACGACCTGA 1587
Query 1585 CGTTTTGCTTGCATCGAGCTGGCTTGACCATGGTTTAGGGATTGTGAAAGAGACAGGTAG 1644
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1588 CGTTTTGCTTGCATCGAGCTGGCTCGACCATGGTTTAGGGATTGTGAAAGAGACAGGTAG 1647
Query 1645 CATGAGCGACGCACTCGCGGTTCTCCTTGGCGATGACATAGGAAATGACTATATGAATAT 1704
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1648 CATGAGCGACGCACTTGCGGTTCTCCTCGGCGATGACATAGGAAATGACTATATGAATAT 1707
Query 1705 GAGTGTTGGGGCATCCTCAGGAGTTGGGTCTTGTTCTTGGAGCAACATGCCACCTGTCTG 1764
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1708 GAGTGTTGGGGCATCCTCAGGAGTTGGGTCTTGTTCTTGGAGCAACATGCCTCCTGTCTG 1767
Query 1765 TCAAATGACAGAACTACCCTAACGAGCCCGGGAAATCCTCCACTCCATTGGT 1816
||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1768 TCAAATGACGGAACTACCCTAACGAGCCCGGGAAATGGTTCACTCCATTGGT 1819
> Ahg478481 jgi|Araly1|478481|fgenesh2_kg.3__1182__AT3G11440.1
Length=1959
Score = 776 bits (420), Expect = 0.0
Identities = 940/1180 (80%), Gaps = 79/1180 (7%)
Strand=Plus/Plus
Query 250 CCATAATGAGTCACCAGCTGCTGATGA-TAATGG-AAGTGACTGCAGAAGTAGATGGG-A 306
||||||||| ||||||||||||||| | || ||| || || ||||||||||||| ||| |
Sbjct 202 CCATAATGAATCACCAGCTGCTGAT-AGTATTGGCAA-TGGCTGCAGAAGTAGA-GGGAA 258
Query 307 TGGTCATGCT-CTCAAGAAAGGCCCTTGGAGTTCAGCTGAAGATGATATTCTT-ATTGAC 364
| | || | || |||||||| || |||| ||| ||||||||| ||| || |||||
Sbjct 259 AAGCCGTG-TCCTGAAGAAAGGACCATGGACATCAACTGAAGATGGGATT-TTAATTGAT 316
Query 365 TATGTGAATAAGCATGGTGAGGGTAACTGGAATGCTGTGCAGAAACACACCAGCTTGTTT 424
||||| || |||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 317 TATGTAAAGAAGCATGGCGAGGGTAACTGGAATGCTGTGCAGAAACACACGAGCCTGGCC 376
Query 425 CGTTGTGGTAAAAGCTGTCGTCTAAGATGGGCTAATCATCTGAGGCCAAATTTGAAGAAA 484
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 377 CGGTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAAA 436
Query 485 GGAGCTTTTAGTCAAGAAGAAGAACAGCTTATCGTTGAATTGCATGCCAAGATGGGTAAT 544
||||| ||||| ||||||||||||||||| || |||||| |||| ||||||||||| |||
Sbjct 437 GGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAAT 496
Query 545 AGATGGGCAC-GTATGGCTGCACATTTGCCTGGCCGAACGGATAATGAGATAAAGAATTA 603
| |||||||| | ||||||| |||||| ||||| ||||| ||||||||||||||||||||
Sbjct 497 AAATGGGCACAG-ATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAAAGAATTA 555
Query 604 TTGGAACACTCGTATCAAGAGGCGACAACGAGCTGGTTTGCCACTTTATCCTCCTGAGAT 663
|||||||||||||||||||||| ||||||| || || || |||||||| |||||||| ||
Sbjct 556 TTGGAACACTCGTATCAAGAGGAGACAACGTGCAGGCTTACCACTTTACCCTCCTGAAAT 615
Query 664 GCATGTTGAGGCAC-TTGAGTGGAGTC-AAGAGTATGCCAAGAGT-AGAGT--TATG-GG 717
|||||||| | || || ||||||| | |||||||| | |||||| | | | || | |
Sbjct 616 CCATGTTGAAG-ACTTTCAGTGGAG-CGAAGAGTATACAAAGAGTAATA-TCATAAGAGT 672
Query 718 AGA-AGATAGAAGACATCAAGATTTCTTGCAGCTGGGGAGTTGTGAATCTAATGTCTTCT 776
||| ||| |||||||||||||||||||||||| |||||| || || |||||||||| |
Sbjct 673 AGATAGA-AGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCCAAAGCTAATGTCTTAT 731
Query 777 TTGAT-ACTCTTAATTTTAC--CGA-CATGGTACCTGGTACTTTTGATCTAGCAGATATG 832
||||| | ||| |||||| | | | | || |||||| ||| ||| ||| ||||| ||
Sbjct 732 TTGATGA-TCTAAATTTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAGATTTG 790
Query 833 ACTGCCTACAAAAAT-ATGGGTAACT-GTGCAAGTTCTCCTCGATATGAAAACTTCATGA 890
||| | | || || | || |||| | |||||||| |||| ||||||| || ||||
Sbjct 791 GTTGCATGC-AACATGCTAGG-AACTGGCCCAAGTTCTTCTCGGTATGAAAGCTACATGC 848
Query 891 CACCAACAATCCCCTCCTCGAAGCGACTTTGGGAATCTGAGTTGT-TGTATCCTGGGTGT 949
|||||| | | || ||| | |||| | | |||||||||| | | | || |||| |||
Sbjct 849 CACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTG-GATCTCGGTTTCCTATGTGC 907
Query 950 AGCAGTACCATAAAGCAAGAATTCTC-GTCGCCTGAACAATTCCGGAACACAT-CTCCAC 1007
||||||| ||||||||| |||||| | | || ||||| || | ||| || | || |||
Sbjct 908 AGCAGTAACATAAAGCATGAATTC-CAATATCCGGAACACTTTCAGAATAC-TGCTTCAC 965
Query 1008 A-AACGATTTCCAAAACTTGCAGCT-TCTCAGTTCCTTGTGATGTTGAGCATCCT-CTCT 1064
| || || | ||| | ||||||| | |||| | |||||||||||||| |||||| || |
Sbjct 966 AGAA-GAATCCCAGATCTTGCAG-TATCTC-G--CCTTGTGATGTTGATCATCCTCCT-T 1019
Query 1065 ATGGAAACCGACATTCACCTG-T-T-ATGATTCCAGATAGCCATACCCCTACGGATGGCA 1121
| ||||||| ||||| | ||| | | ||||||||||||||||||||| || | ||||||
Sbjct 1020 ACGGAAACCAACATTTATCTGATATGATGATTCCAGATAGCCATACCGTTATGTATGGCA 1079
Query 1122 TTG-TTCCTTA-TTCTAAGCCCTTATATGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCA 1179
|| |||| || ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1080 -TGCTTCC-TACTTCTAAGCCCTCGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCA 1137
Query 1180 ATATTCAGAAACAA---CATTTGACCAGTGGAAGA--A-ATCGTCATCTCCTCCACACTC 1233
|||||||||||| | ||||||| |||||||||| | | ||||| | | |||||||||
Sbjct 1138 ATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACACCGTCA-C-C-TCCACACTC 1194
Query 1234 TGATCTCCTTGATCCCT-TTGATACTTACATTCAGTCTCCACCACCACCAACGGGGGGAG 1292
||||||||||| | || ||||| | || ||||| ||||||||| || | | || |||
Sbjct 1195 AGATCTCCTTGA-CTCTGTTGATGCCTATATTCAATCTCCACCATCATCG-CAGGTAGAG 1252
Query 1293 AAGAGTCAGATTTATATTCAAATTT-TG--ATACTGGTCTGCTCGATATGTTGCTTC-TG 1348
|||||||||| | ||| || || | || || || || |||||||| |||| ||
Sbjct 1253 --GAGTCAGATTG-T-TTCTC-TTCATGCGACACCGGCCTACTAGATATGTTACTTCATG 1307
Query 1349 GAAGCCAAGATCAGAAATAATAGTACAAAGAACAATTTGT 1388
| |||||||||| ||| |||| | ||| ||| |||||
Sbjct 1308 -AGGCCAAGATCA-AAAC--TAGTGCGAAGCACAGTTTGT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80027604745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5