BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06110.1
Length=2479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940041 jgi|Araly1|940041|scaffold_600585.1 1134 0.0
Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1 918 0.0
> Ahg940041 jgi|Araly1|940041|scaffold_600585.1
Length=1746
Score = 1134 bits (614), Expect = 0.0
Identities = 738/796 (93%), Gaps = 15/796 (2%)
Strand=Plus/Plus
Query 1294 CAGCTATTgaagaagagaaaaggcgaaaagaagaagaagCAAAACGTGCGGCAGAGGCTG 1353
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 691 CAGCTATTGAAGAAGAGAAAAGGCGGAAAGAAGAAGAAGCAAAACGTGCAGCAGAGGCTG 750
Query 1354 CTCAGCTGCACAAGAGAGCCAAGGAAAGAGAGAAGAAGCTTCTGCGCAAAGAACGAAGTC 1413
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 751 CTCTGCTGCACAAGAGAGCCAAGGAAAAAGAGAAGAAGCTTCTGCGCAAAGAACGAAGTA 810
Query 1414 GGCTCAGAGTTCTCTCCGCCCCTGTTCTGTCCCAGCGTCTGCTTGGCATATCTGATGAAC 1473
|||||||| |||| ||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 811 GGCTCAGAATTCTATCCGCACCTGTTCTGTCCCAGCGTCTGCTTAGCATCTCTGATGAAC 870
Query 1474 ATGTGGAAGATCTATGCATGTCACTTAACACCGAGCAGTTGCGGAAACTGTGTGACAAGA 1533
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 ATGTGGAAGATCTATGTATGTCACTTAACACCGAGCAGTTGCGGAAACTGTGTGACAAGA 930
Query 1534 TGGAAAACAAGGAAGGGA-TGGCTTTGGCAAAGGTGATCAAGAATGGGAGCAACATTGAT 1592
|||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 931 TGGAAAACAAGGAA-GGACTGGCTTTGGCAAAGGTGATCAAGAATGGGAACAGCATTGAT 989
Query 1593 GATGAT-A--AAATAGAGATTGAAGAAGAAG-AAGTTCAAGTAGCTGTT-AAGCAGAATG 1647
|||||| | ||||||||||| |||||| || ||| ||| || ||| ||| || |
Sbjct 990 GATGATGATGAAATAGAGATTAAAGAAG-AGAAAGAAGAAGAAGAAGTTCAAGTAG-CT- 1046
Query 1648 GTCATATAGAAGCCAATGGTCATGTAGAAGCCAATGGTCATGTAGAAGCCAAAGTGGATA 1707
|| || || || ||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1047 GT--TA-AGCAG--AATGGTCATATAGAAGCCAATGGTCATGTAGAAGCCAAAGTAGATA 1101
Query 1708 CTGCTACTCATGAGAAGAAAGAGAAACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAA 1767
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CTGCTACTCATCAGAAGAAAGAGAAACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAA 1161
Query 1768 AAGGAACAACCAAGTTCCCAAAAGGAACATCTCAGAGATGGGAAGTCATATCAGAGTACA 1827
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1162 AAGGAACAACTAAGTTCCCAAAAGGAACATCTCAAAGATGGGAAGTCATATCAGAGTACA 1221
Query 1828 TTGGTACAGGAAGATCTGTGGAGGAAATTCTCAAGGCTACTAAAACAGTACTTCTCCAGA 1887
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1222 TTGGTACAGGAAGATCTGTGGAGGAAATTCTCAAGGCTACCAAAACAGTACTTCTCCAGA 1281
Query 1888 AACCCGACTCAGCTAAAGCTTTTGACTCTTTTCTGGAGAATAGGAAACCTGCCGCTTCAA 1947
|||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1282 AACCTGACTCAGCTAAAGCATTTGATTCTTTTCTGGAGAAGAGGAAACCTGCTGCTTCAA 1341
Query 1948 TCAACTCTCCTCTCTCTACACGAGAGGAACTCGGAGAACCAATTATACCGACCAAAGCTC 2007
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1342 TCGCCTCTCCTCTCTCTACACGAGAGGAACTCGGAGAACCAATTATACCGATCAAACCTC 1401
Query 2008 ATGAAGACAACAACTCAACCAAAACAGAGACCGCAGAACAGAACGGTAAGACCAAAGAGA 2067
||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1402 ATGAAGAAAACAACTCAGCCAAAACAGAGACCGCAGAACAGAACGGTAAGAGCGAAGAGA 1461
Query 2068 ACAACAACAGTAACGG 2083
|||||||||| |||||
Sbjct 1462 ACAACAACAGCAACGG 1477
Score = 1099 bits (595), Expect = 0.0
Identities = 658/689 (96%), Gaps = 2/689 (0%)
Strand=Plus/Plus
Query 289 GCTCTGACACATATTTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCTGACACATATTTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTA 60
Query 349 CATACTCCAGTGAGCTTAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTG 408
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTACTCCAGTGAGCTCAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTG 120
Query 409 TGAAGGCTTTAAACCGTGAACCTGCGGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGC 468
| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTAAGGCCGTAAACCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGC 180
Query 469 GTGGTTGTGCTAAGGAAGCCACAAGCAAGAACGAAGATACCGATAAGAAGGTCCCTAAGG 528
|||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 181 GTGGGTGTACAAAGGAAGCCACAAGCAAGAATGAAGATACCGATAAGAAAGTCCCAAAGG 240
Query 529 AGAAGGATGGTGAATATATTCCTTCCTATGACTCCCATAACATCAAAGGAAAGAAGAAGT 588
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGAAGGATAGTGAATATATTCCTTCCTATGACTCGCATAACATCAAAGGAAAGAAGAAGT 300
Query 589 CGGGGAAGCTACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTG 648
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGGGAAGCAACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTG 360
Query 649 CAACAGATGATCAGATCAGAAAAAGTTATCGCGATGCTGCACTGAAGCATCACCCTGATA 708
||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 361 CAACAGAGGATCAGATCAGAAAAAGCTATCGCGAAGCTGCACTGAAACATCACCCTGATA 420
Query 709 AACTGGCTACTCTACTTCTT-CTTGAGGAGACAGAAGAAGCAAAACAAGCCAAAAAGGAT 767
|||| ||||||||||||||| || || |||||||||||||||||||||||||| ||||||
Sbjct 421 AACTTGCTACTCTACTTCTTGCT-GAAGAGACAGAAGAAGCAAAACAAGCCAAGAAGGAT 479
Query 768 GAGATAGAATCTCACTTCAAGTTGATTCAAGAAGCTTATGAGGTTTTGATGGACTCAACA 827
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 480 GAGATAGAATCTCACTTCAAGTTGATTCAAGAAGCATATGAGGTTTTGATGGACCCTACA 539
Query 828 AAAAGAAGAATATTTGACTCTACAGATGAGTTTGATGACAAAGTCCCAACTGATTGTGCT 887
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAAGAAGAATATTTGACTCTACGGATGAGTTTGATGACAAAGTCCCAACTGATTGTGCT 599
Query 888 CCCCAAGACTTCTTCAAGGTTTTTGGTCCAGCATTTAAGAGAAACGCAAGGTGGTCAAAT 947
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 600 CCGCAAGACTTCTTCAAGGTTTTTGGTCCAGCTTTTAAGAGAAACGCAAGGTGGTCGAAT 659
Query 948 TCGCCTTTACCAGATTTGGGAGATGAAAA 976
|||||||||||||||||||||||||||||
Sbjct 660 TCGCCTTTACCAGATTTGGGAGATGAAAA 688
Score = 390 bits (211), Expect = 2e-107
Identities = 258/280 (92%), Gaps = 5/280 (2%)
Strand=Plus/Plus
Query 2044 AACAG-AACGGTAAGACCAAAGAGAACAACAACAGTAACGGCAACTCTGAACCAGCA-GC 2101
||||| |||||||||| | |||||||||||||||| || |||| ||||||||||| | |
Sbjct 1467 AACAGCAACGGTAAGAGCGAAGAGAACAACAACAGCAATGGCATCTCTGAACCAG-ATAC 1525
Query 2102 AGCAT-CTGGTTCAGACCCAGACGGTTGGTCTGCTGTGCAAGAAAGAGCTCTGGTACAGG 2160
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1526 TGC-TGCTGGTTCAGACCCAGACGGTTGGTCTGCTGTGCAAGAAAGAGCACTGGTACAGG 1584
Query 2161 CTTTGAAGACGTTCCCAAAGGAGACAAACCAAAGATGGGAGAGAGTAGCAACAGCTGTTC 2220
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 CTTTGAAGACCTTCCCAAAGGAGACAAACCAAAGATGGGAGAGAGTAGCAACAGCTGTTC 1644
Query 2221 CAGGGAAAACGATGAATCAATGCAAGAAGAAGTTTGCTGATCTTAAGGACGTCATCAGAA 2280
||||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1645 CAGGGAAAACGTTGAACCAATGCAAGAAGAAGTTTGCTGAGCTTAAGGACATCATCAGAA 1704
Query 2281 CCAAGAAACCCACAGCCTAACCTATCCGATTCCTCGAGCT 2320
||||||||||||||||||||| |||| || |||||||||
Sbjct 1705 CCAAGAAACCCACAGCCTAACTTATCAGAGCCCTCGAGCT 1744
> Ahg478482 jgi|Araly1|478482|fgenesh2_kg.3__1183__AT3G11450.1
Length=2072
Score = 918 bits (497), Expect = 0.0
Identities = 1000/1238 (81%), Gaps = 54/1238 (4%)
Strand=Plus/Plus
Query 303 TTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGC-TACTTACATACTC-CAGTG 360
|||||||||| ||| || ||| | | ||| | |||||| || |||||||||| || |
Sbjct 1 TTCATCATGCCGAGCCGGAGAAGTGAGTCTACCGTTAAGCTTA-TTACATACTCTGAG-G 58
Query 361 AGCTTAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTGTGAAGGCTTTAA 420
||||| |||||||| || || ||| ||||| ||||||||||| |||||||||||||||||
Sbjct 59 AGCTTGAGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAA 118
Query 421 ACCGTGAACCTGCGGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGCGTGGTTGTGCT- 479
||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 119 ACCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTTAAATTGCATGGTTGTGCAG 178
Query 480 AAGGAAGCCACAAGCAAGAACGAAGATACCGATAAGAAGGTCCCTA-AGGAGAA-G-GAT 536
||| || ||||| | | || |||| | |||||||| || | | || || | ||
Sbjct 179 AAG-AACCCACA-G-ACGAT-GAAGGTGGTGATAAGAAAGTGGG-AGATGATAAAGAGAA 233
Query 537 GGTGAATATATTCCTTCCTATGA-CTCCCATAACATCAAAGGAAAGAAGAAGTCGGGGAA 595
|| ||||| ||||||| | | | ||| || || ||||||||| |||||||| || |
Sbjct 234 GG--AATATGTTCCTTCAT-TCAACTCGTATGCCAACAAAGGAAAAAAGAAGTCTGGTAC 290
Query 596 GCTA-CAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTGCAACAG 654
| | ||||| || |||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 291 CC-AGCAACAAGACCACTATGCCTTGTTGGGTTTGAGCAATTTAAGATATCTTGCGACAG 349
Query 655 ATGATCAGATCAGAAAAAGTTATCGCGATGCTGCACTGAAGCATCACCCTGATAAACTGG 714
| |||||||| || ||||| ||||| || ||||| ||||||||||| ||||||||||| |
Sbjct 350 AAGATCAGATTAGGAAAAGCTATCGTGAAGCTGCGCTGAAGCATCATCCTGATAAACTCG 409
Query 715 CTACTCTACTTCTT-CTTGAGGAGACAGAAGAAGCAAAACAAGCCAAAAAGGATGAGATA 773
||||||| ||||| | ||||| ||||||||||| || | || ||||| |||||||||
Sbjct 410 CTACTCTCCTTCTCGCA-GAGGAAACAGAAGAAGCCAAGGAGGCAAAAAAAGATGAGATA 468
Query 774 GAATCTCACTTCAA-GTTGATTCAAGAAGCTTATGAGGTTTTGATGGACTCAACAAAAAG 832
||||||| |||||| | |||||||||||| |||||| | ||||||||| |||||| ||
Sbjct 469 GAATCTCGCTTCAAAGC-GATTCAAGAAGCATATGAGATATTGATGGACCCAACAAGGAG 527
Query 833 AAGAATATTTGACTCTACAGATGAGTTTGATGACAAAGTCCCAACTGATTG-T-GCTCCC 890
|||||| |||||||| || ||||||||||||||| | || ||| | ||||| | || | |
Sbjct 528 AAGAATTTTTGACTCCACTGATGAGTTTGATGACGAGGTTCCATCAGATTGCTTGC-CGC 586
Query 891 CAAGACTTCTTCAAGGTTTTTGGTCCAGCATTTAAGAGAAACGCAAGGTGGTCA---AAT 947
||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||| |||
Sbjct 587 -AAGACTTTTTCAAGGTGTTTGGTCCAGCTTTTAAAAGAAATGCTAGGTGGTCAGTGAAT 645
Query 948 TC-GCCT-TTACCAGATTTGGGAGATGAAAATACACCACTTAAAGAGGTTGATAGGTTCT 1005
| || | || |||||||||||||||||||| ||| |||||||||| ||||||| |||||
Sbjct 646 -CAGCGTATT-CCAGATTTGGGAGATGAAAACACAACACTTAAAGATGTTGATAAGTTCT 703
Query 1006 ACAGTACTT--GGTACACTTTTAAAAGCTGGAGAGAGTTTCCTGAAGAAGAGGAGCATGA 1063
||| |||| ||||| |||| || || ||||| || |||||||| ||||||||||||||
Sbjct 704 ACA--ACTTTTGGTACGCTTTCAAGAGTTGGAGGGAATTTCCTGATGAAGAGGAGCATGA 761
Query 1064 TATCGAGCAAGCTGAATCCCGCGAGGAAAAGAGGTGGATGGAGAGAG-AGAATGCAAGAA 1122
| | || ||||| || ||||| || ||| |||||||||||||| || ||||||||| ||
Sbjct 762 TCTTGAACAAGCAGATTCCCGTGAAGAACGGAGGTGGATGGAGA-AGGAGAATGCAAAAA 820
Query 1123 AAACTCAGAAGGCTAGAAAGGAGGAATATGCTCGGATTAGGACTCTTGTGGACAACGCAT 1182
||||| |||||||||||||||||| ||||||| || |||||||||| ||||| || |
Sbjct 821 AAACTGTGAAGGCTAGAAAGGAGGAGCATGCTCGAATCCGGACTCTTGTTGACAATGCGT 880
Query 1183 ATaaaaaagacataagaatacagaaaagaaaggatgacgaaaaggctaagaagctgcaga 1242
||| ||||||| || || ||||||||| || || ||||||||| |||||| ||||
Sbjct 881 ATAGAAAAGACCCGAGGATTGTGAAAAGAAAAGAGGAAGAAAAGGCTGAGAAGCAACAGA 940
Query 1243 agaaagaagcaaaag-TTATGGCCAAGAGGCAGCAGGAAGAAG-CTGCTGCTGCAGCTAT 1300
| ||||||||||| | || ||||||||| | |||||| ||| | | |||||| |||
Sbjct 941 AAAAAGAAGCAAA-GCTTCTGGCCAAGAAGAAGCAGGCAGAGGAC-GCTGCTATTGCTGC 998
Query 1301 TgaagaagagaaaaggcgaaaagaagaagaagCAAAA-CGTGCGGCAGAGGCTGCTCAGC 1359
|||||||||||||||||||||||||||||||| |||| || || ||||| |||| || |
Sbjct 999 TGAAGAAGAGAAAAGGCGAAAAGAAGAAGAAG-AAAAGCGAGCAGCAGAATCTGCACAAC 1057
Query 1360 TGCACAAGAGAGCCAAGGAAAGAGAGAAGAAGCTTCTG-CGCAAAGAACG-AAGTCGGCT 1417
|| |||| | | ||||||| |||||||||||| || ||||||||||| || ||| ||
Sbjct 1058 AACAAAAGAAAACTAAGGAAAAAGAGAAGAAGCT-CTTACGCAAAGAACGGAA-TCGTCT 1115
Query 1418 CAGAGTTCTCTCCGCCCCTGTTC-TGTCCCAGCGTCTGCTTGGCATATCTGATGAACATG 1476
||| |||||| || ||| | | || | ||||||||||||||||| || || ||| ||
Sbjct 1116 TAGAACTCTCTCAGCTCCTCT-CGTGGCTCAGCGTCTGCTTGGCATCTCCGAGGAAGATA 1174
Query 1477 TGGAAGA-TCTATGCATGTCACTTAACACCGAGCAGTT 1513
| || || ||||||||||||||| ||||||||||||||
Sbjct 1175 TAGA-GAATCTATGCATGTCACTAAACACCGAGCAGTT 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93435370985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5