BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06130.2
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487416 jgi|Araly1|487416|fgenesh2_kg.6__550__AT5G06130.2 1712 0.0
Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780 150 2e-35
> Ahg487416 jgi|Araly1|487416|fgenesh2_kg.6__550__AT5G06130.2
Length=1193
Score = 1712 bits (927), Expect = 0.0
Identities = 1041/1096 (95%), Gaps = 8/1096 (1%)
Strand=Plus/Plus
Query 86 AGAAGACGATAGACAGCAAAAAGCGTTGGGCGAGAAGAAGATGACGTGCTTCTCTTCTGC 145
|||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 27 AGAAGACGATTGACAACAAAAAGCGTTTGGCGAG-AGAAGATGACGTGCTTCTCTTGTGC 85
Query 146 TACTCCTCATCGCCATCATCTTCTACTTTCTTCTCCATCTACTTCCAAATCCCTGCTTCG 205
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 86 AACTCCTCATCGCCATCATCTTCTTC-TTC--CTCCATCTACTTCCAAATCCCTGCTTCG 142
Query 206 ATTTCCCTCATCTTATCTGAAACCTAGCCCCAGTCTTCTCTTCCATGGCTCATCTCGCTC 265
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 143 ATTTCACTCATCTTATCTTAAACCTAGCCCCAGTCTTCTCTTTCATGGCTCATCTCGCTC 202
Query 266 TCTCCTCTCCTGTTCAGACGGCAGCAACAACCGTCCTCCTCCCTCCGGTGACACCGTCCC 325
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 203 TCTCCTCTCCTGTTCAGACGGCAGCAACAACGGTCCTCCTCCCTCCGGTGACACCGTCCC 262
Query 326 AAATAACTTCTGTATCATTGAGGGATCAGAGACAGTTCAAGACTTTGTGCAGATGCAGCT 385
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 263 AAATAACTTCTGTATCATTGAGGGATCAGAGACAGTTCAGGATTTTGTGCAGATGCAGCT 322
Query 386 TCAGGAAATCCAAGATAACATAAGGAGTAGACGCAATAAGATATTTCTCCTCATGGAGGA 445
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 323 TCAGGAAATCCAAGATAGCATAAGGAGTAGACGCAATAAGATCTTTCTCCTCATGGAGGA 382
Query 446 AGTGAGGAGGTTACGTGTGCAGCAACGTATCAAGAGTGTTAAAGCCATCAATGAGGACAG 505
||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 383 AGTCAGGAGGTTACGAGTTCAGCAACGTATTAAGAGTGTTAAAGCCATCAATGAGGACAG 442
Query 506 TGAGCTCGAGGCTACCGAGATGCCTGAGATCACATCTTCTATTCCTTTCCTCCCTAATGT 565
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 443 TGAGCTCGAGGCTACCGAGATGCCTGAGATCACATCTTCCATTCCTTTTCTCCCTAATGT 502
Query 566 GACACCAAAGACTTTGAAACAACTCTATTCGACCAGCGTTGCATTGATATCGGGAATTAT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 503 GACACCAAAGACTTTGAAACAACTCTATTCGACCAGCGTTGCATTGATATCGGGAATAAT 562
Query 626 CTTCTTTGGTGGTCTCATTGCACCTAATCTGGAACTGAAGGTAGGACTTGGAGGAACCTC 685
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 563 CTTCTTTGGTGGTCTCATTGCACCTAATCTGGAGCTGAAGGTAGGACTTGGAGGAACCTC 622
Query 686 TTATGAAGATTTTATAAGGAGCTTACATCTACCCTTGCAATTAAGCCAGGTAGATCCAAT 745
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 623 TTATGAAGATTTTATAAGGAGCTTGCATCTACCCTTGCAATTAAGCCAGGTAGATCCAAT 682
Query 746 TGTGGCATCTTTTTCTGGCGGGGCCGTGGGAGTCATTTCAACCTTGATGCTAATCGAAGT 805
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 683 CGTGGCATCTTTTTCTGGCGGGGCCGTGGGAGTCATTTCAACGTTGATGCTAATCGAAGT 742
Query 806 TAACAATGTTAAACAACAAGAGAAGAAGAGGTGCAAATACTGCCTTGGGACTGGATACTT 865
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 743 TAACAATGTTAAACAACAAGAGAAGAAGAGGTGCAAGTACTGCCTTGGGACTGGATACTT 802
Query 866 GCCATGCGCTCGATGCTCAGCTAGTGGTGTGTGTTTGAGCATTGATCCCATCACAAGACC 925
|||||| |||||||| ||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 803 GCCATGTGCTCGATGTTCAGCTAGTGGTGTGTGCTTAAGCATTGATCCCATCACACGACC 862
Query 926 TAGAGCTACAAACCAGCTTATGCAGGTCGCGACCACAAAAAGATGTCTAAATTGTTCCGG 985
||||||| |||||| |||||||| ||||||||| |||||||| ||| |||| ||||||||
Sbjct 863 TAGAGCTTCAAACCGGCTTATGCCGGTCGCGACAACAAAAAGGTGTTTAAACTGTTCCGG 922
Query 986 CGCAGGAAAGGTGATGTGTCCGACATGTCTTTGCACCGGGATGGTAACAGCTAGCGAGCA 1045
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 923 CGCAGGAAAGGTGATGTGTCCGACATGTCTTTGCACTGGGATGGTCACGGCTAGCGAGCA 982
Query 1046 TGACCCCCGCTTTGACCCTTTCGATTAGAAAACAATGGCCT--CCTTTGAAATTGGTCCT 1103
|||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 983 TGACCCGCGCTTTGACCCTTTTGATTAGAAAACAATGACCTTTCCTTTGAAATTGGTCCT 1042
Query 1104 TGCAAAAGCTAAGCCAAGCCTATGA--GAACTGAGGAGAGCCAAACCTCGTCATATAAAT 1161
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 1043 TGCAAAAGCTAAGCCAGGACTATGAATGAACTGAGGAGAGCCAAACCTCGTCATATAAAT 1102
Query 1162 GTTTTACATAATAAAA 1177
| ||||||||||||||
Sbjct 1103 GCTTTACATAATAAAA 1118
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 10 TTTTAGCCCAAAATGGTAACCTTCGTAG 37
||||||||||||||||||||||||||||
Sbjct 1 TTTTAGCCCAAAATGGTAACCTTCGTAG 28
> Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780
Length=2427
Score = 150 bits (81), Expect = 2e-35
Identities = 177/219 (81%), Gaps = 23/219 (11%)
Strand=Plus/Plus
Query 334 TCTGTATCATTGAGGGATCAGAGACAGTTCAAGACTTT-GTGCAGATGCAGCTTCAGGAA 392
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 2165 TCTGTATCATTGAGGGATCAGAGACAGTTCAAGATTTTTGTGCAGATGCAGCTCCAGGAA 2224
Query 393 ATCCAAGATAACATAAGGAGTAGACGCAATAAGATATTTCTCCTCATGGAGGAAGTGAGG 452
|||||||| | | | || | ||||| |||||||| || || ||||| |||
Sbjct 2225 ATCCAAGAGA-C----G-------CG-A-TAAGACCTTTCTCCTTATTGAAGAAGTCAGG 2270
Query 453 AGGTTACGTGTGCAGCAACGTATCAAGAGTGTTAAAGCCATCAATGAGGACAGTGAGCTC 512
|||||||| | ||||||||| || |||||||||||||||||||||||| |||| | ||
Sbjct 2271 AGGTTACGAGCGCAGCAACGGATTAAGAGTGTTAAAGCCATCAATGAGCACAGAG-GC-- 2327
Query 513 GAGGCTACCGAGATGCCTGAGATCACATCTTCTATTCCT 551
| |||||||| ||||| ||| ||||||| ||||||
Sbjct 2328 -A----ACCGAGATACCTGACATCCCATCTTCCATTCCT 2361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5