BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06140.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349878 jgi|Araly1|349878|fgenesh1_pg.C_scaffold_6000471 1980 0.0
> Ahg349878 jgi|Araly1|349878|fgenesh1_pg.C_scaffold_6000471
Length=1212
Score = 1980 bits (1072), Expect = 0.0
Identities = 1167/1213 (96%), Gaps = 5/1213 (0%)
Strand=Plus/Plus
Query 34 ATGGAGAG--C-ACGGAGCAGCCGAGGAACATCTCCGGATCGATGCAGAGCCCTAGATCT 90
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAGCACGACGGAGCAGCCGAGGAACATCTCGGGATCGATGCAGAGCCCTAGATCT 60
Query 91 CCGTCTTCGCATCCGTATCTGTCAGTCTCCGTCACAGATCCTGTCAAATTAGGCAATGGC 150
|||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCGTCTCCGCAGCCGTATTTGTCAGTCTCCGTCACAGATCCCGTCAAATTAGGCAATGGC 120
Query 151 GTACAAGCTTATATCTCTTACAGAGTTATCACCAAGACTAACTTGCCGGAGTACCAAGGA 210
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 GTACAAGCTTATATCTCTTACAGAGTTATCACCAAGACCAACTTGCCGGAGTATCAAGGA 180
Query 211 CCCGAGAAGATTGTTATTAGACGATACAGTGATTTCGTCTGGTTACGGGATCGGCTTTTT 270
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTGAGAAGATTGTTATCAGACGATACAGTGATTTCGTCTGGTTACGGGATCGGCTTTTT 240
Query 271 GA-AAAGTACAAGGGCATTTTCATTCCTCCTCTTCCAGAGAAGAGTGCTGTAGAAAAATT 329
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAAA-TACAAGGGCATTTTCATTCCTCCTCTTCCAGAGAAGAGTGCTGTAGAAAAATT 299
Query 330 CCGCTTTAGTGCCGAATTTATTGAAATGAGGCGAGCAGCATTGGATATATTTGTTAATCG 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGCTTTAGTGCCGAATTTATTGAAATGAGGCGAGCAGCATTGGATATATTTGTTAATCG 359
Query 390 AATAGCATTACACCCTGAGCTTCAGCAGAGTGAGGATCTTAGGACCTTTTTGCAAGCAGA 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATAGCATTACACCCTGAGCTTCAGCAGAGTGAGGATCTTAGGACCTTTTTGCAAGCAGA 419
Query 450 TGAAGAGACAATGGACAGATTCAGGTTTCAGGAAACTAGTATATTCAAGAAGCCTGCAGA 509
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TGAAGAGACAATGGACAGATTCAGGTTTCAGGAAACTGGTATATTCAAGAAGCCTGCAGA 479
Query 510 TCTAATGCAAATGTTTAGGGATGTCCAGTCAAAAGTTAGTGATGCTGTCCTTGGAAAAGA 569
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TCTTATGCAAATGTTTAGGGATGTCCAGTCAAAAGTTAGTGATGCTGTCCTTGGAAAGGA 539
Query 570 AAAACCTGTTGAAGAAACTACTGCTGACTACGAGAAGCTTAAACATTACATTTTCGAGCT 629
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 AAAACCTGTTGAAGAAACTACTGCTGACTACGAAAAGCTTAAGCATTACATTTTCGAGCT 599
Query 630 TGAGAACCACTTGACTGAGGCTCAGAAGCATGCGTATCGCCTAGTCAAGAGGCATAGAGA 689
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 600 TGAGAACCACTTGGCTGAGGCTCAGAAGCATGCATATCGCCTTGTCAAGAGGCATAGAGA 659
Query 690 GTTGGGTCAATCACTGTTGGATTTTGGCAAGGCTGTAAAACTTCTTGGGGCTTGTGAGGG 749
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 660 GTTGGGTCAATCACTGTTGGATTTTGGCAAAGCTATAAAACTTCTTGGGGCTTGTGAGGG 719
Query 750 TGAACCTACAGGAAAAGCATTTTCCGATCTTGGAACTAAATCTGAACTGTTATCGATTAA 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TGAACCTACAGGAAAAGCATTTTCCGATCTTGGAACTAAATCTGAACTGTTATCAATTAA 779
Query 810 GCTCCAGAAAGAGGCTCAACAAGTCCTGATGAACTTCGAGGAACCCTTGAAGGACTATGT 869
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GCTCCAAAAAGAGGCTCAACAAGTCCTGATGAACTTCGAGGAACCTTTGAAGGACTATGT 839
Query 870 TCGTTATGTACAATCGATTAAGGCAACAATAGCAGAACGAGGCACTGCTTTCAAACAACA 929
||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 840 TCGTTATGTGCAATCAATTAAAGCAACAATTGCAGAGCGAGGCACTGCTTTCAAGCAACA 899
Query 930 TTGTGAATTGTCAGAAACAACAAAGTTAAAAGAAATAAATCTTGACAAACTCATGCTCAC 989
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTGTGAATTGGCAGAAACAACGAAGTTAAAAGAAATAAATCTTGACAAACTCATGCTCAC 959
Query 990 ACGTTCAGACAAAGTAGGAGAAGCTGAGATCGAATACAGAGAGATAAAAGCAGAAAGTGA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACGTTCAGACAAAGTAGGAGAAGCTGAGATCGAATACAGAGAGATAAAAGCAGAAAGTGA 1019
Query 1050 GGAAGCCACGAGAAGATTTGAGAGGATAGTAAAGAGAATGGAAGATGAGATAGTAAGGTT 1109
||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1020 AGAAGCTACGAGAAGATTTGAGAGGATAGTGAAGAGAATGGAGGAGGAGATAGTAAGGTT 1079
Query 1110 TCAAGAGCAGAAGACGGAAGAGATGGGAGTGGCATTCCATCAGTTTGCGAAAGGACAAGC 1169
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 TCAAGAGCAGAAGACAGAAGAGATGGGAGTCGCATTCCATCAGTTTGCGAAAGGACAAGC 1139
Query 1170 TCGCTTAGCAAACAGTGTCGCGGATGCTTGGAGATCCCTTCTTCCCAAACTTGAAGCTTC 1229
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCGCTTAGCAAACAGTGTCGCAGATGCTTGGAGATCCCTTCTTCCCAAACTTGAAGCTTC 1199
Query 1230 TTATTCTGTCTAA 1242
| | ||||||||
Sbjct 1200 TGCTACTGTCTAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5