BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06160.1 Length=1904 Score E Sequences producing significant alignments: (Bits) Value Ahg487419 jgi|Araly1|487419|fgenesh2_kg.6__553__AT5G06160.1 2680 0.0 Ahg891742 jgi|Araly1|891742|Al_scaffold_0007_3728 222 6e-57 > Ahg487419 jgi|Araly1|487419|fgenesh2_kg.6__553__AT5G06160.1 Length=1792 Score = 2680 bits (1451), Expect = 0.0 Identities = 1604/1677 (96%), Gaps = 13/1677 (1%) Strand=Plus/Plus Query 1 GATTATCTTTTTCTCTCGGATTGGCGTTAAAAATTTTACTGGCGAGATTTCGGATTGAGG 60 |||| || |||||||| |||||||||||||||||||| | |||||||||||||||||||| Sbjct 1 GATTTTCCTTTTCTCTTGGATTGGCGTTAAAAATTTTGCCGGCGAGATTTCGGATTGAGG 60 Query 61 AAAAGAAAAGTGACTGGAATTTAGGGTTTAGACTCCGGCGAAGAAGGAGATTTCAAAGCT 120 |||||||||| || ||||| |||||||||||||||||||||||||| |||| |||||||| Sbjct 61 AAAAGAAAAGAGATTGGAA-TTAGGGTTTAGACTCCGGCGAAGAAGAAGATCTCAAAGCT 119 Query 121 TCGAAGACAGAGAAAATGTCGTCGACTCTCCTCGAGCAAACTCGCTCCAATCACGAAGAG 180 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 120 TCGAAGACAGAGAAGATGTCGTCGACTCTCCTCGAGCAAACTCGCTCCAATCATGAAGAG 179 Query 181 GTTGAAAGGTTGGAGCGATTGGTTGTGGAAGATCTACAGAAGGAGCCACCGTCCAGCAAG 240 ||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 180 GTTGAGAGATTGGAGCGATTGGTTGTGCAAGATCTACAGAAAGAGCCACCGTCCAGCAAG 239 Query 241 GACAGATTGGTCCAGGGACATCGTGTTCGTCACATGATTGAGTCTATTATGCTCACCACT 300 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct 240 GACAGATTGGTCCAGGGTCATCGTGTTCGTCACATGATTGAGTCCATCATGCTCACCACT 299 Query 301 GAGAAACTTGTTGAAACCTATGAAGATAAGGATGGGGCGTGGGATGATGAGATTGCAGCG 360 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 300 GAGAAACTTGTTGAAACCTATGAAGATAAGGATGGGGCGAGGGATGACGAGATTGCAGCG 359 Query 361 CTTGGTGGCCAGACTGCGACAGGGACAAATGTGTTTAGTGAATTTTACGATCGTTTGAAA 420 |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| Sbjct 360 CTTGGTGGCCAGACTGCGACAGGGACAAATGTGTATAGTGCATTTTATGATCGTTTGAAA 419 Query 421 GAGATACGTGAATATCATAAAAGGCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAGATACGTGAATATCATAAAAGGCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGAC 479 Query 481 TACGAAGCACGCCTGAAGGAGGAACCAATTATTGCGTTCAGTGGAGAGGAAGGCAATGGT 540 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 480 TACGAAGCACGCCTGAAGGAGGAACCAGTTATTGCGTTCAGTGGAGAGGAAGGCAATGGT 539 Query 541 CGGTACTTGGACTTGCATGATATGTATAACCAGTACATCAACTCTAAATTTGGGGAAAGG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CGGTACTTGGACTTGCATGATATGTATAACCAGTACATCAACTCTAAATTTGGGGAAAGG 599 Query 601 GTTGAATATTCTGCTTACCTTGATGTTTTTTCTCAACCAGAGAAAATACCGCGTAAACTG 660 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 600 GTTGAATATTCTGCTTACCTTGATGTTTTTTCTCAACCAGAGAAAATCCCGCGTAAACTG 659 Query 661 AAGTTATCGAGGCAATACATGAAGTATATGGAAGCTCTACTTGAGTACCTGGTCTACTTC 720 ||||||||||||||||||| |||||||||||||||||| || |||||| |||||||||| Sbjct 660 AAGTTATCGAGGCAATACAGGAAGTATATGGAAGCTCTGCTAGAGTACTTGGTCTACTTT 719 Query 721 TTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTTCTAAGGTTTGTTCTGAT 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 720 TTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTTCTAAGGTTTGGTCTGAT 779 Query 781 TTTGAAGAGCAATATGCAGATGG--AA-T---A-G-T---AGAA-GGCCTGGATAATGAA 828 ||||||||||||||||||||||| || | | | | |||| |||| ||| |||||| Sbjct 780 TTTGAAGAGCAATATGCAGATGGAAAAGTAGAAGGCTGGGAGAATGGCCAGGACAATGAA 839 Query 829 CTTATTCCATCTCAGCATACTGTCATAGATCTTGATTACTACAGTACAGTCGAGGAACTG 888 ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 840 CTTGTTTCATCTCAGCATACTGTCATAGATCTTGATTATTACAGTACAGTCGAGGAACTG 899 Query 889 GTAGATGTAGGACCTGAAAAGCTAAAAGAGGCATTGGGGGCATTAGGACTGAAGGTTGGT 948 |||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 900 GTAGATATAGGACCTGAAAAGCTTAAGGAGGCATTGGGAGCATTAGGACTGAAGGTTGGT 959 Query 949 GGTACTCCGCAGCAGCGTGCCGAGAGACTTTTCCTGACAAAGCATACGCCTTTGGAAAAG 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GGTACTCCGCAGCAGCGTGCCGAGAGACTTTTCCTGACAAAGCATACGCCTTTGGAAAAG 1019 Query 1009 CTGGATAAGAAACATTTTGCCAGACCTCCACACAACGGAAAACAAAACGGAGATGCCAAA 1068 |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| Sbjct 1020 CTGGATAAGAAACATTTTGCCAAAGCTCCACACAACGGGAAACAAAACGGAGATGCCAAA 1079 Query 1069 TCAACACATGAGTCTGAAAATGCTAAAGAGATTGCACTAACAGAGGCCAAAGTGAAGAAA 1128 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1080 TCAACACATGAGTCTGAAAATGCTAAAGAGATTGCACTAATAGAGGCGAAAGTGAAGAAA 1139 Query 1129 CTCTGCAATTTACTTGATGAGACCATCGAAAGGACAAAACAAAACATTGTAAAGAAACAG 1188 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1140 CTCTGCAATTTACTTGATGAGACCATTGAAAGGACAAAACAAAACGTTGTAAAGAAACAG 1199 Query 1189 TCGTTGACATATGAAGAAATGGAGGGAGAACGTGAAGGGGAGGAAGCTAATACCGAATTA 1248 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1200 TCGTTGACATATGAAGAAATGGAGGGAGAACGTGAAGGGGAGGAAGCTAATGCCGAATCA 1259 Query 1249 GAAAGTGATGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGAT 1308 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1260 GAAAGTGATGACGAGGACGGTGAGATTTACAATCCGCTGAAGCTGCCAATAGGTTGGGAT 1319 Query 1309 GGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGGAGTTTAAATGC 1368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGGAGTTTAAATGC 1379 Query 1369 GAGATATGTGGGAACTATAGCTATTGGGGAAGAAGGGCTTTTGAGAGACATTTTAAAGAA 1428 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1380 GAGATATGTGGGAACTATAGCTATTGGGGAAGAAGGGCGTTTGAGAGACATTTTAAAGAA 1439 Query 1429 TGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAACGAA 1488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1440 TGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAATGAA 1499 Query 1489 ATCACTTCGATTGAGGAAGCCAAAGAATTGTGGAAGAGGATACAGGAGAGGCAAGGAGTG 1548 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1500 ATCACTTCGATTGAGGAAGCGAAAGAGTTGTGGAAGAGGATACAGGAGAGGCAAGGAGTG 1559 Query 1549 AACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACATTTACAAC 1608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 AACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACATTTACAAC 1619 Query 1609 AAGAAGACTTACTCTGATCTTCAACGCCAAGGTCTCATCTGATTGATCACATCCTCT 1665 ||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| Sbjct 1620 AAGAAGACTTACTCTGATCTTCAACGCCAAGGTCTTATCTGATTGATGAAATCTTCT 1676 Score = 82.4 bits (44), Expect = 1e-14 Identities = 65/74 (88%), Gaps = 6/74 (8%) Strand=Plus/Plus Query 1721 TTTGTAAAATCAAACCATTCGTCATCTTTTTGTGAGGTTTCGTCT--CA--TTAAAACAG 1776 ||||||||||||||||||||||||||||||||||||||| | | | || ||||||||| Sbjct 1690 TTTGTAAAATCAAACCATTCGTCATCTTTTTGTGAGGTTACTTTTGTCACCTTAAAACAG 1749 Query 1777 TAT-TTAGTTTATG 1789 | | |||||||||| Sbjct 1750 T-TCTTAGTTTATG 1762 > Ahg891742 jgi|Araly1|891742|Al_scaffold_0007_3728 Length=474 Score = 222 bits (120), Expect = 6e-57 Identities = 152/165 (92%), Gaps = 12/165 (7%) Strand=Plus/Plus Query 444 GCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGACTACGAAGCACGCCTGAAGGAGGA 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 GCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGACTACGAAGCACGCCTGAAGGAGGA 212 Query 504 ACCAATTATTGCGTTCAGTGGAGAGGAAGGCAATGGTCGGTACTTGGACTTGCATGATAT 563 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 213 ACCAGTTATTGCGTTCAGTGGAGAGGAAGGCAATGGTCGGTACTTGGACTTGCATGA--- 269 Query 564 GTATAACCAGTACATCAACTCTAAATTTGGGGAAAGGGTTGAATA 608 ||| | | | || | ||||||||||||||||||||||||||| Sbjct 270 GTA---C-A-T-CA--A-CTCTAAATTTGGGGAAAGGGTTGAATA 305 Score = 193 bits (104), Expect = 5e-48 Identities = 117/123 (95%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 645 AATACCGCG-TAAACTGAAGTTATCGAGGCAATACATGAAGTATATGGAAGCTCTACTTG 703 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || | Sbjct 302 AATACCGCGATAAACTGAAGTTATCGAGGCAATACAGGAAGTATATGGAAGCTCTGCTAG 361 Query 704 AGTACCTGGTCTACTTCTTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTT 763 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 AGTACTTGGTCTACTTTTTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTT 421 Query 764 CTA 766 ||| Sbjct 422 CTA 424 Score = 62.1 bits (33), Expect = 1e-08 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 734 AGCCGTTGCAAGATCTTGACCGGATACTTTCTA 766 ||||||||||||||||||||||||||||||||| Sbjct 424 AGCCGTTGCAAGATCTTGACCGGATACTTTCTA 456 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71533480110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5