BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06160.1
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487419 jgi|Araly1|487419|fgenesh2_kg.6__553__AT5G06160.1 2680 0.0
Ahg891742 jgi|Araly1|891742|Al_scaffold_0007_3728 222 6e-57
> Ahg487419 jgi|Araly1|487419|fgenesh2_kg.6__553__AT5G06160.1
Length=1792
Score = 2680 bits (1451), Expect = 0.0
Identities = 1604/1677 (96%), Gaps = 13/1677 (1%)
Strand=Plus/Plus
Query 1 GATTATCTTTTTCTCTCGGATTGGCGTTAAAAATTTTACTGGCGAGATTTCGGATTGAGG 60
|||| || |||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 GATTTTCCTTTTCTCTTGGATTGGCGTTAAAAATTTTGCCGGCGAGATTTCGGATTGAGG 60
Query 61 AAAAGAAAAGTGACTGGAATTTAGGGTTTAGACTCCGGCGAAGAAGGAGATTTCAAAGCT 120
|||||||||| || ||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct 61 AAAAGAAAAGAGATTGGAA-TTAGGGTTTAGACTCCGGCGAAGAAGAAGATCTCAAAGCT 119
Query 121 TCGAAGACAGAGAAAATGTCGTCGACTCTCCTCGAGCAAACTCGCTCCAATCACGAAGAG 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 TCGAAGACAGAGAAGATGTCGTCGACTCTCCTCGAGCAAACTCGCTCCAATCATGAAGAG 179
Query 181 GTTGAAAGGTTGGAGCGATTGGTTGTGGAAGATCTACAGAAGGAGCCACCGTCCAGCAAG 240
||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 180 GTTGAGAGATTGGAGCGATTGGTTGTGCAAGATCTACAGAAAGAGCCACCGTCCAGCAAG 239
Query 241 GACAGATTGGTCCAGGGACATCGTGTTCGTCACATGATTGAGTCTATTATGCTCACCACT 300
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 240 GACAGATTGGTCCAGGGTCATCGTGTTCGTCACATGATTGAGTCCATCATGCTCACCACT 299
Query 301 GAGAAACTTGTTGAAACCTATGAAGATAAGGATGGGGCGTGGGATGATGAGATTGCAGCG 360
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 300 GAGAAACTTGTTGAAACCTATGAAGATAAGGATGGGGCGAGGGATGACGAGATTGCAGCG 359
Query 361 CTTGGTGGCCAGACTGCGACAGGGACAAATGTGTTTAGTGAATTTTACGATCGTTTGAAA 420
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 360 CTTGGTGGCCAGACTGCGACAGGGACAAATGTGTATAGTGCATTTTATGATCGTTTGAAA 419
Query 421 GAGATACGTGAATATCATAAAAGGCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATACGTGAATATCATAAAAGGCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGAC 479
Query 481 TACGAAGCACGCCTGAAGGAGGAACCAATTATTGCGTTCAGTGGAGAGGAAGGCAATGGT 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TACGAAGCACGCCTGAAGGAGGAACCAGTTATTGCGTTCAGTGGAGAGGAAGGCAATGGT 539
Query 541 CGGTACTTGGACTTGCATGATATGTATAACCAGTACATCAACTCTAAATTTGGGGAAAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGTACTTGGACTTGCATGATATGTATAACCAGTACATCAACTCTAAATTTGGGGAAAGG 599
Query 601 GTTGAATATTCTGCTTACCTTGATGTTTTTTCTCAACCAGAGAAAATACCGCGTAAACTG 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GTTGAATATTCTGCTTACCTTGATGTTTTTTCTCAACCAGAGAAAATCCCGCGTAAACTG 659
Query 661 AAGTTATCGAGGCAATACATGAAGTATATGGAAGCTCTACTTGAGTACCTGGTCTACTTC 720
||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||
Sbjct 660 AAGTTATCGAGGCAATACAGGAAGTATATGGAAGCTCTGCTAGAGTACTTGGTCTACTTT 719
Query 721 TTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTTCTAAGGTTTGTTCTGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 TTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTTCTAAGGTTTGGTCTGAT 779
Query 781 TTTGAAGAGCAATATGCAGATGG--AA-T---A-G-T---AGAA-GGCCTGGATAATGAA 828
||||||||||||||||||||||| || | | | | |||| |||| ||| ||||||
Sbjct 780 TTTGAAGAGCAATATGCAGATGGAAAAGTAGAAGGCTGGGAGAATGGCCAGGACAATGAA 839
Query 829 CTTATTCCATCTCAGCATACTGTCATAGATCTTGATTACTACAGTACAGTCGAGGAACTG 888
||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 CTTGTTTCATCTCAGCATACTGTCATAGATCTTGATTATTACAGTACAGTCGAGGAACTG 899
Query 889 GTAGATGTAGGACCTGAAAAGCTAAAAGAGGCATTGGGGGCATTAGGACTGAAGGTTGGT 948
|||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 900 GTAGATATAGGACCTGAAAAGCTTAAGGAGGCATTGGGAGCATTAGGACTGAAGGTTGGT 959
Query 949 GGTACTCCGCAGCAGCGTGCCGAGAGACTTTTCCTGACAAAGCATACGCCTTTGGAAAAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGTACTCCGCAGCAGCGTGCCGAGAGACTTTTCCTGACAAAGCATACGCCTTTGGAAAAG 1019
Query 1009 CTGGATAAGAAACATTTTGCCAGACCTCCACACAACGGAAAACAAAACGGAGATGCCAAA 1068
|||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 1020 CTGGATAAGAAACATTTTGCCAAAGCTCCACACAACGGGAAACAAAACGGAGATGCCAAA 1079
Query 1069 TCAACACATGAGTCTGAAAATGCTAAAGAGATTGCACTAACAGAGGCCAAAGTGAAGAAA 1128
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1080 TCAACACATGAGTCTGAAAATGCTAAAGAGATTGCACTAATAGAGGCGAAAGTGAAGAAA 1139
Query 1129 CTCTGCAATTTACTTGATGAGACCATCGAAAGGACAAAACAAAACATTGTAAAGAAACAG 1188
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1140 CTCTGCAATTTACTTGATGAGACCATTGAAAGGACAAAACAAAACGTTGTAAAGAAACAG 1199
Query 1189 TCGTTGACATATGAAGAAATGGAGGGAGAACGTGAAGGGGAGGAAGCTAATACCGAATTA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1200 TCGTTGACATATGAAGAAATGGAGGGAGAACGTGAAGGGGAGGAAGCTAATGCCGAATCA 1259
Query 1249 GAAAGTGATGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGAT 1308
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1260 GAAAGTGATGACGAGGACGGTGAGATTTACAATCCGCTGAAGCTGCCAATAGGTTGGGAT 1319
Query 1309 GGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGGAGTTTAAATGC 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGGAGTTTAAATGC 1379
Query 1369 GAGATATGTGGGAACTATAGCTATTGGGGAAGAAGGGCTTTTGAGAGACATTTTAAAGAA 1428
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1380 GAGATATGTGGGAACTATAGCTATTGGGGAAGAAGGGCGTTTGAGAGACATTTTAAAGAA 1439
Query 1429 TGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAACGAA 1488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 TGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAATGAA 1499
Query 1489 ATCACTTCGATTGAGGAAGCCAAAGAATTGTGGAAGAGGATACAGGAGAGGCAAGGAGTG 1548
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1500 ATCACTTCGATTGAGGAAGCGAAAGAGTTGTGGAAGAGGATACAGGAGAGGCAAGGAGTG 1559
Query 1549 AACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACATTTACAAC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACATTTACAAC 1619
Query 1609 AAGAAGACTTACTCTGATCTTCAACGCCAAGGTCTCATCTGATTGATCACATCCTCT 1665
||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||
Sbjct 1620 AAGAAGACTTACTCTGATCTTCAACGCCAAGGTCTTATCTGATTGATGAAATCTTCT 1676
Score = 82.4 bits (44), Expect = 1e-14
Identities = 65/74 (88%), Gaps = 6/74 (8%)
Strand=Plus/Plus
Query 1721 TTTGTAAAATCAAACCATTCGTCATCTTTTTGTGAGGTTTCGTCT--CA--TTAAAACAG 1776
||||||||||||||||||||||||||||||||||||||| | | | || |||||||||
Sbjct 1690 TTTGTAAAATCAAACCATTCGTCATCTTTTTGTGAGGTTACTTTTGTCACCTTAAAACAG 1749
Query 1777 TAT-TTAGTTTATG 1789
| | ||||||||||
Sbjct 1750 T-TCTTAGTTTATG 1762
> Ahg891742 jgi|Araly1|891742|Al_scaffold_0007_3728
Length=474
Score = 222 bits (120), Expect = 6e-57
Identities = 152/165 (92%), Gaps = 12/165 (7%)
Strand=Plus/Plus
Query 444 GCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGACTACGAAGCACGCCTGAAGGAGGA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGACTACGAAGCACGCCTGAAGGAGGA 212
Query 504 ACCAATTATTGCGTTCAGTGGAGAGGAAGGCAATGGTCGGTACTTGGACTTGCATGATAT 563
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 ACCAGTTATTGCGTTCAGTGGAGAGGAAGGCAATGGTCGGTACTTGGACTTGCATGA--- 269
Query 564 GTATAACCAGTACATCAACTCTAAATTTGGGGAAAGGGTTGAATA 608
||| | | | || | |||||||||||||||||||||||||||
Sbjct 270 GTA---C-A-T-CA--A-CTCTAAATTTGGGGAAAGGGTTGAATA 305
Score = 193 bits (104), Expect = 5e-48
Identities = 117/123 (95%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 645 AATACCGCG-TAAACTGAAGTTATCGAGGCAATACATGAAGTATATGGAAGCTCTACTTG 703
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 302 AATACCGCGATAAACTGAAGTTATCGAGGCAATACAGGAAGTATATGGAAGCTCTGCTAG 361
Query 704 AGTACCTGGTCTACTTCTTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTT 763
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AGTACTTGGTCTACTTTTTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTT 421
Query 764 CTA 766
|||
Sbjct 422 CTA 424
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 734 AGCCGTTGCAAGATCTTGACCGGATACTTTCTA 766
|||||||||||||||||||||||||||||||||
Sbjct 424 AGCCGTTGCAAGATCTTGACCGGATACTTTCTA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71533480110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5