BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06170.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487420 jgi|Araly1|487420|fgenesh2_kg.6__554__AT1G66570.1 2058 0.0
Ahg908151 jgi|Araly1|908151|Al_scaffold_0002_1232 1975 0.0
Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472 843 0.0
Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1 769 0.0
Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1 763 0.0
> Ahg487420 jgi|Araly1|487420|fgenesh2_kg.6__554__AT1G66570.1
Length=1557
Score = 2058 bits (1114), Expect = 0.0
Identities = 1362/1483 (92%), Gaps = 11/1483 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGACATCCAAGCAAAAGAAGATGCGGCGCCTGTT-GATAGACAGTCTTCTTCGTC 59
||||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| ||
Sbjct 79 ATGAGTGACCTCCAAGCAAAAAAAGATGCGGCGGCT-TTGGATAGACAGTCTTCTTCCTC 137
Query 60 GGT-TGTGGTTCCTGATGAGCCGTCACCTCTAAGAAAGATGATATCAGTGGCTTCTATCG 118
|| || ||||| ||||| ||| ||||| || |||||||||||||| |||||||||||||
Sbjct 138 -GTCTGCGGTTCTTGATGGGCCATCACCGCTGAGAAAGATGATATCGGTGGCTTCTATCG 196
Query 119 CAGCCGGTATACAGTTTGGTTGGGCTCTTCAGCTTTCTCTCCTAACCCCATACGTTCAGC 178
| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 197 CTGCCGGTATTCAGTTTGGTTGGGCTCTTCAGCTTTCTCTGCTAACTCCATACGTGCAGC 256
Query 179 TTCTCGGAGTCCCACACAAATGGTCATCTTTCATATGGCTATGTGGTCCTATCTCCGGTC 238
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 257 TTCTCGGAGTCCCACATAAATGGTCATCTTTCATATGGCTCTGTGGTCCTATCTCCGGCC 316
Query 239 TGCTCGTCCAGCCAACCGTCGGTTACTTCAGCGACCGATGCAAGTCAAGATTCGGTCGTC 298
|||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 317 TGCTTGTCCAGCCATCCGTTGGTTACTTCAGCGACAGATGCAAGTCAAGATTCGGTCGTC 376
Query 299 GTCGACCTTTCATCGCCACTGGTGCCTTGCTTGTTGCCCTTGCTGTTATACTAATTGGAT 358
|||| |||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct 377 GTCGTCCTTTCATCGCCACGGGCGCCTTGCTTGTCGCCCTTGCTGTTATACTAATCGGAT 436
Query 359 TTGCGGCTGACTTCGGCCACACCATGGGAGATAAACTCGACGAAGCTGTCAAGATAAGAG 418
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 437 TCGCGGCTGATTTCGGCCACACCATGGGAGACAAACTCGACGAAGCTGTCAAGATGCGAG 496
Query 419 CCGTTGGTTTCTTCGTTGTCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCTTCAAG 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CCGTTGGTTTCTTCGTTATCGGTTTCTGGATCCTTGACGTGGCTAACAACACTCTTCAAG 556
Query 479 GACCTTGCCGTGCTTTTCTTGGTGATTTAGCAGCCGGAGATGCTAAGAAAACTCGAACTG 538
||||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 557 GACCTTGTCGCGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACGCGAACAG 616
Query 539 CCAACGCGATTTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTGGGATACGCTGCGGGAT 598
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 617 CAAACGCGATTTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTAGGATACGCTGCAGGAT 676
Query 599 CGTACACTAACCTCCACAAGATTTTCCCTTTCACAGTGACTAAAGCATGCGACATCTATT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CGTACACTAACCTCCACAAGATTTTCCCTTTCACAGTGACTAAAGCATGCGACATCTATT 736
Query 659 GTGCAAATCTCAAGAGCTGTTTCATTATTTCCATCACTCTCCTCATAGTCCTCACAATCA 718
| ||||||||||||||||||||||| |||||||||||||||||| ||||| |||| ||||
Sbjct 737 GCGCAAATCTCAAGAGCTGTTTCATCATTTCCATCACTCTCCTCCTAGTCGTCACCATCA 796
Query 719 TAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCTAATGCAGATTCCG-ACAATGAG 777
||||||||||||||||||||||||||||||||||||| || ||||| || | | || ||
Sbjct 797 TAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCAAAGGCAGACTCTGGAAAA-GAT 855
Query 778 AAAACTCCCTTCTTTGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGG 837
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AAAACTCCTTTCTTCGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCCAATGTGG 915
Query 838 ATGCTTCTAGCCGTCACGGCCTTGAACTGGATCGCATGGTTTCCTTTTCTTTTATACGAT 897
||||| ||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 916 ATGCTACTAATCGTCACGGCCTTGAACTGGATCGCGTGGTTCCCTTTCCTTTTATACGAT 975
Query 898 ACCGATTGGATGGGTCGTGAAGTGTATGGTGGAGACTCAGCAGGAGATGACAAAATGAAG 957
|| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 976 ACAGATTGGGTGGGTCGTGAAGTGTACGGTGGAGACTCAAAAGGAGATGACAAAATGAAG 1035
Query 958 AAACTATACAACCACGGAATCCAAGTTGGTTCGTTGGGGTTGATGCTTAACTCTATCGTT 1017
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1036 AAACTATACAACCAAGGAATTCAAGTTGGTTCGTTGGGATTGATGCTTAACTCTATCGTT 1095
Query 1018 CTTGGAGTCATGTCCCTTGTTATTGGAGTGATTAGTAAGAAAATTGGAG---CTAAAAGG 1074
|||||| ||||||| || | ||||| || |||||||| |||||| |||| ||||||||
Sbjct 1096 CTTGGATTCATGTCGCTCGGTATTGAAGGGATTAGTAGGAAAATGGGAGGAGCTAAAAGG 1155
Query 1075 CTTTGGGGAGCTGTGAACATAATCCTCGCGGTGTGTTTGGCAATGACAGTTTTGGTTACT 1134
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1156 CTTTGGGGAGCTGTGAATATAATTCTCGCCGTGTGTTTGGCAATGACAGTTTTGGTTACT 1215
Query 1135 AAAAAGGCTGAGGAGCACCGGAAGATCGCTGGTCGGATGGCCCTTCCTACCAATGCCATC 1194
|||||||| |||||||||||||||||||| |||| ||||||||||||||| ||| ||||
Sbjct 1216 AAAAAGGCCGAGGAGCACCGGAAGATCGCCGGTCCGATGGCCCTTCCTACGGATGGCATC 1275
Query 1195 AGAGATGGAGCATTGAGTCTCTTTGCTATTCTTGGAATTCCTCTTGCTATTACATTTAGT 1254
|||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1276 AGAGCTGGAGCATTGACCCTCTTTGCTCTTCTTGGAATTCCTCTGGCTATTACATTTAGT 1335
Query 1255 ATTCCATTTGCATTAGCTTCCATTATTTCAAGCAGTTCCGGTGCCGGTCAAGGACTCTCT 1314
||||| |||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1336 ATTCCGTTTGCACTAGCTTCCATTATTTCAAGCAGCTCCGGCGCCGGCCAAGGACTCTCT 1395
Query 1315 CTAGGAGTTTTAAACATGGCAATAGTGATACCACAAATGATTGTATCGTTTGGAGTTGGT 1374
|||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1396 CTAGGAGTTTTAAATATGGCAATAGTGATACCACAAATGGTTGTATCGTTTGCAGTTGGT 1455
Query 1375 CCAATTGATGCGTTATTTGGAGGTGGAAACTTACCTGGATTTGTGGTTGGAGCTATAGCA 1434
|| || ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1456 CCTATCGATGCCTTATTTGGAGGTGGAAACTTACCAGGATTTGTGGTCGGAGCTATTGCA 1515
Query 1435 GCT-CTAATCAGCAGTGTTGTGGCACTTACCGTTTTACCTTAA 1476
|| | ||| ||||||||||||||| ||||||| |||||||||
Sbjct 1516 GCGGC-AATTAGCAGTGTTGTGGCATTTACCGTATTACCTTAA 1557
> Ahg908151 jgi|Araly1|908151|Al_scaffold_0002_1232
Length=1485
Score = 1975 bits (1069), Expect = 0.0
Identities = 1355/1492 (91%), Gaps = 23/1492 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGACATCCAAGCAAAAGAAGATGCGGCGCCTGTTGATAGACAGTCTTCTTCGTCG 60
||||||||| ||||||||||| |||||| |||| || ||||||||||||||||| ||
Sbjct 1 ATGAGTGACCTCCAAGCAAAAAAAGATGTGGCGGTTGGGGATAGACAGTCTTCTTCCTC- 59
Query 61 GTTG-TGGTTCCTGATGAGCCGTCACCTCTAAGAAAGATGATATCAGTGGCTTCTATCGC 119
|| | |||||| ||||| ||| || || ||||||||||||||||| ||||||||||||||
Sbjct 60 GTCGATGGTTCTTGATGGGCCATCGCCGCTAAGAAAGATGATATCGGTGGCTTCTATCGC 119
Query 120 AGCCGGTATACAGTTTGGTTGGGCTCTTCAGCTTTCTCTCCTAACCCCATACGTTCAGCT 179
|||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 120 CGCCGGTATTCAGTTTGGTTGGGCTCTTCAGCTATCTCTGCTAACTCCATACGTTCAGCT 179
Query 180 TCTCGGAGTCCCACACAAATGGTCATCTTTCATAT-G----G-CTATGTGGTCCTATCTC 233
||||||||||||||| ||||||||||||||||||| | | || ||||||||||||||
Sbjct 180 TCTCGGAGTCCCACATAAATGGTCATCTTTCATATGGCTCTGTCTCTGTGGTCCTATCTC 239
Query 234 CGGTC-TGCTCGTCCAGCCAACCGTCGGTTACTTCAGCGACCGATGCAAGTCAAGATTCG 292
||| | |||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 240 CGG-CTTGCTTGTCCAGCCATCCGTTGGTTACTTCAGCGACAGATGCAAGTCAAGATTCG 298
Query 293 GTCGTCGTCGACCTTTCATCGCCACTG-GTGCCTTGCTTGTTGCCCTTGCTGTTATACTA 351
|||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 299 GTCGTCGTCGTCCTTTCATCGCCAC-GAGTGCCTTGCTTGTCGCCCTTGCTGTTATACTA 357
Query 352 ATTGGATTTGCGGCTGACTTCGGCCACACCATGGGAGATAAACTCGACGAAGCTGTCAAG 411
|| ||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 358 ATCGGATTCGCGGCTGATTTCGGGCACACCATGGGAGACAAACTCGACGAAGCTGTCAAG 417
Query 412 ATAAGAGCCGTTGGTTTCTTCGTTGTCGGTTTCTGGATCCTTGACGTGGCTAACAACACT 471
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGCGAGCCGTTGGTTTCTTCGTTGTCGGTTTCTGGATCCTTGACGTGGCTAACAACACT 477
Query 472 CTTCAAGGACCTTGCCGTGCTTTTCTTGGTGATTTAGCAGCCGGAGATGCTAAGAAAACT 531
|||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 478 CTTCAAGGACCTTGTCGCGCTTTTCTTGGTGATTTAGCAGCTGGAGACGCTAAGAAAACG 537
Query 532 CGAACTGCCAACGCGATTTTCTCTTTCTTCATGGCCGTTGGAAACGTTTTGGGATACGCT 591
||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CGAACAGCAAACGCAATTTTCTCTTTTTTCATGGCCGTTGGAAACGTTTTGGGATACGCT 597
Query 592 GCGGGATCGTACACTAACCTCCACAAGATTTTCCCTTTCACAGTGACTAAAGCATGCGAC 651
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 598 GCAGGATCGTACACTAACCTCCACAAGATCTTCCCTTTCACGGTGACTAAAGCATACGAC 657
Query 652 ATCTATTGTGCAAATCTCAAGAGCTGTTTCATTATTTCCATCACTCTCCT-CATAGTCCT 710
|||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 658 ATCTATTGCGCAAATCTCAAGAGCTGTTTCATCATTTCCATCACTCTCCTTC-TAGTCGT 716
Query 711 CACAATCATAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCTAATGCAGATTCCGA 770
||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 717 CACCATCATAGCTCTTTGGTACGTGGAAGACAAGCAATGGTCGCCAAAGGCAGACTCTGA 776
Query 771 CAATGAGAAAACTCCCTTCTTTGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCC 830
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 GAATGATAAAACTCCGTTCTTCGGCGAGATCTTTGGAGCTTTCAAGGTGATGAAACGTCC 836
Query 831 AATGTGGATGCT-TCTAGCCGTCACGGCCTTGAACTGGATCGCATGGTTTCCTTTTCTTT 889
|||||||||||| | || |||||||||||||||||||||||| ||||| ||||||||||
Sbjct 837 AATGTGGATGCTAT-TAATCGTCACGGCCTTGAACTGGATCGCGTGGTTCCCTTTTCTTT 895
Query 890 TATACGATACCGATTGGATGGGTCGTGAAGTGTATGGTGGAGACTCAGCAGGAGATGACA 949
|||||||||| |||||| ||||| |||||||||| |||||||||||| |||||||||||
Sbjct 896 TATACGATACAGATTGGGTGGGTGGTGAAGTGTACGGTGGAGACTCAAAAGGAGATGACA 955
Query 950 AAATGAAGAAACTATACAACCACGGAATCCAAGTTGGTTCGTTGGGGTTGATGCTTAACT 1009
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 956 AAATGAAGAAACTATACAACCAAGGAATTCAAGTTGGTTCGTTGGGATTGATGCTTAACT 1015
Query 1010 CTATCGTTCTTGGAGTCATGTCCCTTGTTATTGGAGTGATTAGTAAGAAAATTGGAG--- 1066
|||||||||||||| ||||||| || | ||||| || ||||||||||||||| ||||
Sbjct 1016 CTATCGTTCTTGGATTCATGTCGCTCGGTATTGAAGGGATTAGTAAGAAAATGGGAGGAG 1075
Query 1067 CTAAAAGGCTTTGGGGAGCTGTGAACATAATCCTCGCGGTGTGTTTGGCAATGACAGTTT 1126
||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||||
Sbjct 1076 CTAAAAGGCTTTGGGGAGCTGTGAATATCATCCTTGCCGTGTGTTTGGCAATGACGGTTT 1135
Query 1127 TGGTTACTAAAAAGGCTGAGGAGCACCGGAAGA-TCGCTGGTCGGATGGCCCTTCCTACC 1185
|| |||||||||||| ||||||||||||| || |||| |||| ||||||||||||||||
Sbjct 1136 TGATTACTAAAAAGGAGGAGGAGCACCGGA-GAATCGCCGGTCCGATGGCCCTTCCTACC 1194
Query 1186 AATGCCATCAGAGATGGAGCATTGAGTCTCTTTGCTATTCTTGGAATTCCTCTTGCTATT 1245
||| |||||||| ||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 1195 GATGGCATCAGAGCTGGAGCATTAACTCTCTTTGCTCTTCTTGGAATTCCTCTTGCTATT 1254
Query 1246 ACATTTAGTATTCCATTTGCATTAGCTTCCATTATTTCAAGCAGTTCCGGTGCCGGTCAA 1305
||||| |||||||| |||||| |||||||||| || |||||||| ||||| |||||||||
Sbjct 1255 ACATTCAGTATTCCGTTTGCACTAGCTTCCATAATCTCAAGCAGCTCCGGCGCCGGTCAA 1314
Query 1306 GGACTCTCTCTAGGAGTTTTAAACATGGCAATAGTGATACCACAAATGATTGTATCGTTT 1365
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 GGACTATCTCTAGGAGTTTTAAACATGGCAATAGTGATTCCACAAATGATTGTATCGTTT 1374
Query 1366 GGAGTTGGTCCAATTGATGCGTTATTTGGAGGTGGAAACTTACCTGGATTTGTGGTTGGA 1425
||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1375 GGAGTTGGTCCTATTGATGCATTATTTGGAGGTGGAAACTTACCAGGATTTGTTGTTGGA 1434
Query 1426 GCTATAGCAGCT-CTAATCAGCAGTGTTGTGGCACTTACCGTTTTACCTTAA 1476
||||| ||||| | ||||||||||||||||||| |||| ||||| ||||||
Sbjct 1435 GCTATTGCAGCGGC-AATCAGCAGTGTTGTGGCATTTACTGTTTTGCCTTAA 1485
> Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472
Length=1230
Score = 843 bits (456), Expect = 0.0
Identities = 716/836 (86%), Gaps = 39/836 (5%)
Strand=Plus/Plus
Query 97 ATGATATCAGTGGCTTCTATCGCAGCCGGTATACAGTTTGGTTGGGCTCTTCAGCTTTCT 156
|||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| |||
Sbjct 1 ATGATATCGGTGGCTTCTATTGCCGCCGGTATTCAGTTCGGTTGGGCTCTTCAGCTGTCT 60
Query 157 CTCCTAACCCCATACGTTC-AGCTTCTCGGAGTCCCACACAAATGGTCATCTTTCATATG 215
| ||||| |||||||| | || |||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTGCTAACTCCATACGTGCAAG-TTCTTGGAGTCCCACACAAATGGTCATCTTTCATATG 119
Query 216 GCTATGTGGTCCTATCTCCGGTCTGCTCGTCCAGCCAACCGTC-GGTTACTTCAGCGACC 274
||| ||||||||| |||| | ||||| ||||||||| || | ||||| ||||| ||||
Sbjct 120 GCTCTGTGGTCCTGTCTCTAGCCTGCTTGTCCAGCCATCC-ACTGGTTATTTCAGTGACC 178
Query 275 GATGCAAGTCAAGATTCGGTCGTCGTCGACCTTTCATCGCCACT-GGTGCCTTGCTTGTT 333
||||| ||||||||||||||| ||| || ||||||||||||| | || ||||| |||||
Sbjct 179 GATGCCAGTCAAGATTCGGTCATCGCCGTCCTTTCATCGCCA-TCGGCGCCTTACTTGTA 237
Query 334 GCCCTTGCTGTTATACTAATTGGATTTGCGGCTGACTTCGGCCACACCATGGGAGATAAA 393
| | |||||| | | | | ||| | | | | ||| | | ||| | | |||
Sbjct 238 G-CGTTGCTG-T-T-C--A-TGG----GAGAC-AAAATCGACGA-ACC-TCTTCTA-AAA 282
Query 394 CTCGACGAAGCTGTCA-AGATAAGAGCCGTTGGTT-TCTTCG-TTGTCGGTTTCTGGATC 450
|||| | || ||| | | | | | || ||| |||||| || ||||||||||||||
Sbjct 283 CTCG--G--TCT-TCACA-ACACCA-ACATT-GTTATCTTCGCTT-TCGGTTTCTGGATC 333
Query 451 CTTGACGTGGCTAACAACACTCTTCAAGGACCTTGCCGTGCTTTTCTTGGTGATTTAGCA 510
|||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 334 CTTGACGTGGCTAACAACACACTCCAAGGACCTTGCCGCGCTTTCCTTGGTGATTTAGCC 393
Query 511 GCCGGAGATGCTAAGAAAACTCGAACTGCCAACGCGATTTTCTCTTTCTTCATGGCCGTT 570
|| ||||| ||||||||||| ||||| || |||||| |||||||||| ||||||||||||
Sbjct 394 GCTGGAGACGCTAAGAAAACGCGAACAGCAAACGCGTTTTTCTCTTTTTTCATGGCCGTT 453
Query 571 GGAAACGTTTTGGGATACGCTGCGGGATCGTACACTAACCTCCACAAGATTTTCCCTTTC 630
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 454 GGAAACGTTTTGGGATACGCGGCCGGATCGTACACTAACCTCCACAAGATCTTCCCTTTC 513
Query 631 ACAGTGACTAAAGCATGCGACATCTATTGTGCAAATCTCAAGAGCTGTTTCATT-ATTTC 689
||| ||||||||||||||||||| ||||| |||||||||||||| |||||| || |||||
Sbjct 514 ACAATGACTAAAGCATGCGACATTTATTGCGCAAATCTCAAGAGTTGTTTC-TTCATTTC 572
Query 690 CATCACTCTCCTCATAGTCCTCACAATCATAGCTCTTTGGTACGTGGAAGACAAGCAATG 749
||||||||| ||| ||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 573 CATCACTCTTCTCCTAGTCGTCACCATCATAGCTCTTCGGTACGTGGAAGACAAGCAATG 632
Query 750 GTCGCCTAATGCAGATTCCGACAATGAGAAAACTCCCTTCTTTGGCGAGATCTTTGGAGC 809
||||||||| ||||| |||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 633 GTCGCCTAAGGCAGACTCCGACAACGAGAAAACTCCGTTCTTCGGTGAGATCTTTGGAGC 692
Query 810 TTTCAAGGTGATGAAACGTCCAATGTGGATGCTT-CTAG-CCGTCACGGCCTTGAACTGG 867
||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||
Sbjct 693 TTTCAAGGTGATGAAACGTCCAATGTGGATG-TTACTAATCC-TCACGGCCTTGAACTGG 750
Query 868 ATCGCATGGTTTCCTTTTCTTTTATACGATACCGATTGGATGGGTCGTGAAGTGTA 923
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 751 ATCGCATGGTTCCCTTTTCTTTTATATGATACTGATTGGATGGGTCGTGAAGTGTA 806
Score = 507 bits (274), Expect = 1e-142
Identities = 370/414 (89%), Gaps = 16/414 (4%)
Strand=Plus/Plus
Query 1063 GGAGCTAAAAGGCTTTGGGGAGCTGTGAACATAATCCTCGCGGTGTGTTTGGCAATGACA 1122
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 829 GGAGCTAAAAGGCTTTGGGGAGCTGTGAATACCATCCTCGCGGTGTGTTTGGCAATGACG 888
Query 1123 GTTTTGGTTACTAAAAAGGCTGAGGAGCACCGGAAGA-TCGCTGGTCGGATGGCCCTTCC 1181
|||||||||||||||||||| ||||||||||||| || |||| |||| ||||||||||||
Sbjct 889 GTTTTGGTTACTAAAAAGGCGGAGGAGCACCGGA-GAATCGCCGGTCCGATGGCCCTTCC 947
Query 1182 TACCAATGCCATCAGAGATGGAGCATTGAGTCTCTTTGCTATTCTTGGAATTCCTCTTGC 1241
||| ||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 948 TACTGATGGCATCAGAGCTGGAGCATTGACTCTCTTTGCTCTTCTTGGAATTCCTCTTGC 1007
Query 1242 TATTACATTTAGTATTCCATTTGCATTAGCTTCCATTATTTCAAGCAGTTCCGGTGCCGG 1301
||||||||| |||||||| || ||| ||||||||||||| |||||||| ||||| |||||
Sbjct 1008 TATTACATTCAGTATTCCGTTCGCACTAGCTTCCATTATCTCAAGCAGCTCCGGCGCCGG 1067
Query 1302 TCAAGGACTCTCTCTAGGAGTTTTAAACATGGCAATAGTGATACCACAAATGATTGTATC 1361
|||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1068 CCAAGGA---------G---TTTTAAACATGGCAATAGTGATACCACAAATGGTTGTATC 1115
Query 1362 GTTTGGAGTTGGTCCAATTGATGCGTTATTTGGAGGTGGAAACTTACCTGGATTTGTGGT 1421
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1116 GTTTGGAGTTGGTCCTATTGATGCGTTATTTGGAGGTGGAAACTTACCAGGATTTGTGGT 1175
Query 1422 TGGAGCTATAGCAGCT-CTAATCAGCAGTGTTGTGGCACTTACCGTTTTACCTT 1474
|||||||| ||||| | ||||||||||||||||||| |||||||||||||||
Sbjct 1176 CGGAGCTATTGCAGCAGC-AATCAGCAGTGTTGTGGCATTTACCGTTTTACCTT 1228
> Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1
Length=1634
Score = 769 bits (416), Expect = 0.0
Identities = 1086/1397 (78%), Gaps = 96/1397 (7%)
Strand=Plus/Plus
Query 93 AAAGATGATATCAGTGGCTTCTATCGCAGCCGGTATACAGTTTGGTTGGGCTCTT-CAGC 151
||| || || || |||||||| ||||| |||||| |||||||||| ||||| ||| ||||
Sbjct 128 AAA-ATCATCTCCGTGGCTTCAATCGCCGCCGGTGTACAGTTTGGGTGGGC-CTTACAGC 185
Query 152 TTTCTCTCCTAACCCCATACGTTCAGCTTCTCGGAGTCCCACACAAATGGTCATCTTTCA 211
| ||||| || || || ||||| || ||||||||| |||| ||||||||||| |||| ||
Sbjct 186 TCTCTCTTCTGACTCCTTACGTACAACTTCTCGGAATCCCTCACAAATGGTCGTCTTACA 245
Query 212 TATGGCTATGTGGTCCTATCTCCGGTC-TGCTCGTCCAGCCAACCGTCGGTTACTTCAGC 270
| ||||| ||||||||||||||||| | |||| || || |||| |||||||||| |||
Sbjct 246 TGTGGCTCTGTGGTCCTATCTCCGG-CATGCTTGTTCAACCAATCGTCGGTTACCACAGT 304
Query 271 GACCGATGCAAGTCAAGATTCGGTCGTCGTCGACCTTTCATCGCCACTGGTGCCTTGCTT 330
||||||||| |||| ||||||||||| ||||| |||||||||||||| || ||| | ||
Sbjct 305 GACCGATGCGAGTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCCGTACTC 364
Query 331 GTTGCCCT-TGCTGTTATACTAATTGGATTTGCGGCTGACT-TCGGCCACACCATGGGAG 388
|| ||| | | | ||| | || || ||||| ||||| || | | || || | | ||||
Sbjct 365 GTAGCCGTCT-CGGTTTTCCTTATCGGATTCGCGGCGGA-TATGGGACATAGTTTTGGAG 422
Query 389 ATAAACTCGACGAAGC--TGTCAA-GA-TAAGAGCCGTTGGT-TTCTTCGTTGTC-GGTT 442
|||||||||| ||| | || || || | ||||| || | ||||| || | ||||
Sbjct 423 ATAAACTCGA-GAA-CAAGGT-AAGGACT-CGAGCCATT-ATAATCTTCCTTACCGGGTT 477
Query 443 TCTGGATCCTTGACGTGGCTAACAACACTCTT-CAAGGACCTTGCCGTGCTTTTCTT-GG 500
| ||| |||||||||||||||||||||| ||| |||||||| |||||||| |||||| |
Sbjct 478 T-TGGGTCCTTGACGTGGCTAACAACAC-CTTACAAGGACCATGCCGTGC-TTTCTTAGC 534
Query 501 TGATTTAGCAGCCGGAGATGCTAAGAAAACTCGAACT-GCCAACGCGAT-TTTCTCTTTC 558
|||||||| |||||||| ||||| ||||| || | | || ||||| || |||||||||
Sbjct 535 CGATTTAGCCGCCGGAGACGCTAAAAAAACGCG-AGTCGCAAACGC-ATGTTTCTCTTTT 592
Query 559 TTCATGGCCGTTGGAAACGTTTTGGGATACGCTGCGGGATCGTACACTAACCTCCACAAG 618
|| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 593 TTTATGGCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAA 652
Query 619 AT-TTTCCCTTTCACAGTGACTAAAGCATGCGACATCTATTGTGCAAATCTCAAGAGC-T 676
|| ||| ||||||||| |||| ||||| ||||| ||||||| || |||||||||| | |
Sbjct 653 ATGTTT-CCTTTCACAATGACAAAAGCTTGCGATGTCTATTGCGCGAATCTCAAGA-CTT 710
Query 677 GTTTCATT-ATTTCCATCACTCTCCT-CATAGTCCTCACAATCATAG-CTCTTTGGTACG 733
||||| || | |||||||||||||| | || ||||||| || | | |||| |||||||
Sbjct 711 GTTTC-TTCCTATCCATCACTCTCCTCCTTA-TCCTCACCTTC-TCGTCTCTATGGTACG 767
Query 734 TGGAAGACAAGCAATGG--T-CGCCTA-ATGCAGATTCCGACAATGAGAAAAC-TC---- 784
| ||||||| |||||| | |||| | ||| ||| || || |||||||| ||
Sbjct 768 TTAAAGACAAACAATGGTCTCCGCC-ACATGGAGA----GA-AA-GAGAAAACATCAAGT 820
Query 785 C----CTTCTTTGGCGAGATCTTTGGAGCTTTCAAG-GTGATGAAACGTCCAATGTGGAT 839
| |||||||| || |||||||||||| || || || ||||||||||| ||||||||
Sbjct 821 CTTTTTTTCTTTGGAGAAATCTTTGGAGCTGTC-AGAGTCATGAAACGTCCCATGTGGAT 879
Query 840 GCTTCTAGCCGTCACGGCCT-TGAACTGGATCGCATGGTTTCCTTTTCTTTTATACGATA 898
||||||| ||||||| | | || |||||||| |||||||| |||||||| |||||||
Sbjct 880 GCTTCTAATGGTCACGG-TTATTAATTGGATCGCTTGGTTTCCGTTTCTTTTGTACGATA 938
Query 899 CCGATTGGATGGGTCGTGAAGTGTATGGTGGAGACTCAGCA-GGAGATGA-CAAAATGAA 956
||||||||||||||||||||||||| |||||| | |||| | ||| |||| ||| ||
Sbjct 939 CCGATTGGATGGGTCGTGAAGTGTACGGTGGAAATTCAG-ATGGAAATGAGCAAGCC-AA 996
Query 957 GAAACTATACAACCACGGAATCCAAGTTGGTTCGTTGGGGTTGATGCTTAACTCTAT-CG 1015
|||||| ||| |||| ||| | || | |||| | ||||| |||||| |||| || || |
Sbjct 997 GAAACTTTACGACCAAGGAGTTCAGGCTGGTGCATTGGGATTGATGTTTAATTCAATAC- 1055
Query 1016 TTCTTGGAGTCATGTCCCTTGTTATTGGAGT-GATTAGTAAGAAAATTGGAG---CTAAA 1071
||||||| || |||| |||| | ||| | | |||| || |||||| |||| |||||
Sbjct 1056 TTCTTGGTTTCGTGTCACTTGGTGTTGAA-TCGATTGGTCGGAAAATGGGAGGAGCTAAA 1114
Query 1072 AGGCTTTGGGGA-GCTGTGAACATAATCCTCGCGGT-GTGTTTGGCAATGACAGTT-TTG 1128
| ||||||||| | |||||| | || ||||| | | ||||||| ||||| ||| |||
Sbjct 1115 CGACTTTGGGGATG-TGTGAATTTCATACTCGCCATAG-GTTTGGCCATGACGGTTCTTG 1172
Query 1129 GTTACTAAAAAGGCTGAGGAGCACCGGAAGATCGCTGGTCGGATGGCCCTT-CCTACCAA 1187
|||| || ||||| | |||||||| | ||| ||| | | | || || | ||
Sbjct 1173 -TTACGCAATCCGCTGATAACCACCGGAAAACCGCCGGT-GCTTTGTCCGGACCGAGCAG 1230
Query 1188 TGCCATCAGAGATGGAGCATTGAGTCTCTTTGCTATTCTTGGAATTCCTCTTG-CTATTA 1246
|| || | || |||| ||| ||||||||| | ||||||| || || ||| | ||||
Sbjct 1231 TGGTATTAAAGCCGGAGTATTTAGTCTCTTTACCGTTCTTGGTATCCCA-TTGGCCATTA 1289
Query 1247 CATTT-AGTATTCCATTTGCATTAGCTTCCATTATT-TCAAGCAGTTCCGGTGCCGGTCA 1304
| || ||| ||||||||||| |||| |||||| || |||| || |||||||||||| ||
Sbjct 1290 C-TTACAGTGTTCCATTTGCACTAGCGTCCATT-TTCTCAACCAATTCCGGTGCCGGCCA 1347
Query 1305 AGGACTCTCTCTAGGAGTTTTAAACATGGCAATA-GTGATACCACAAATGATTGTATCGT 1363
|||||| |||||||| |||||||| || || || || |||||||||||||| ||||| |
Sbjct 1348 AGGACTTTCTCTAGGCGTTTTAAATATAGCGATTTGT-ATACCACAAATGATAGTATCAT 1406
Query 1364 T-TGGAGTTGGTCCAATTG-ATGCGTTATTT-GGAGGTGGAAACTTACCTGGATTTGTGG 1420
| | ||| || ||| ||| | || | | || || ||||||||| ||||| ||||||||
Sbjct 1407 TCTCAAGT-GGACCA-TTGGACGC-TCACTTCGGCGGTGGAAACCTACCTTCATTTGTGG 1463
Query 1421 TTGGAGCTATAGCAGCT 1437
| |||||||| || |||
Sbjct 1464 TCGGAGCTATTGCGGCT 1480
> Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1
Length=1634
Score = 763 bits (413), Expect = 0.0
Identities = 1085/1397 (78%), Gaps = 96/1397 (7%)
Strand=Plus/Plus
Query 93 AAAGATGATATCAGTGGCTTCTATCGCAGCCGGTATACAGTTTGGTTGGGCTCTT-CAGC 151
||| || || || |||||||| ||||| |||||| |||||||||| ||||| ||| ||||
Sbjct 128 AAA-ATCATCTCCGTGGCTTCAATCGCCGCCGGTGTACAGTTTGGGTGGGC-CTTACAGC 185
Query 152 TTTCTCTCCTAACCCCATACGTTCAGCTTCTCGGAGTCCCACACAAATGGTCATCTTTCA 211
| ||||| || || || ||||| || ||||||||| |||| ||||||||||| |||| ||
Sbjct 186 TCTCTCTTCTGACTCCTTACGTACAACTTCTCGGAATCCCTCACAAATGGTCGTCTTACA 245
Query 212 TATGGCTATGTGGTCCTATCTCCGGTC-TGCTCGTCCAGCCAACCGTCGGTTACTTCAGC 270
| ||||| ||||||||||||||||| | |||| || || |||| |||||||||| |||
Sbjct 246 TGTGGCTCTGTGGTCCTATCTCCGG-CATGCTTGTTCAACCAATCGTCGGTTACCACAGT 304
Query 271 GACCGATGCAAGTCAAGATTCGGTCGTCGTCGACCTTTCATCGCCACTGGTGCCTTGCTT 330
||||||||| |||| ||||||||||| ||||| |||||||||||||| || ||| | ||
Sbjct 305 GACCGATGCGAGTCCAGATTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCCGTACTC 364
Query 331 GTTGCCCT-TGCTGTTATACTAATTGGATTTGCGGCTGACT-TCGGCCACACCATGGGAG 388
|| ||| | | | ||| | || || ||||| ||||| || | | || || | | ||||
Sbjct 365 GTAGCCGTCT-CGGTTTTCCTTATCGGATTCGCGGCGGA-TATGGGACATAGTTTTGGAG 422
Query 389 ATAAACTCGACGAAGC--TGTCAA-GA-TAAGAGCCGTTGGT-TTCTTCGTTGTC-GGTT 442
|||||||||| ||| | || || || | ||||| || | ||||| || | ||||
Sbjct 423 ATAAACTCGA-GAA-CAAGGT-AAGGACT-CGAGCCATT-ATAATCTTCCTTACCGGGTT 477
Query 443 TCTGGATCCTTGACGTGGCTAACAACACTCTT-CAAGGACCTTGCCGTGCTTTTCTT-GG 500
| ||| |||||||||||||||||||||| ||| |||||||| |||||||| |||||| |
Sbjct 478 T-TGGGTCCTTGACGTGGCTAACAACAC-CTTACAAGGACCATGCCGTGC-TTTCTTAGC 534
Query 501 TGATTTAGCAGCCGGAGATGCTAAGAAAACTCGAACT-GCCAACGCGAT-TTTCTCTTTC 558
|||||||| |||||||| ||||| ||||| || | | || ||||| || |||||||||
Sbjct 535 CGATTTAGCCGCCGGAGACGCTAAAAAAACGCG-AGTCGCAAACGC-ATGTTTCTCTTTT 592
Query 559 TTCATGGCCGTTGGAAACGTTTTGGGATACGCTGCGGGATCGTACACTAACCTCCACAAG 618
|| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 593 TTTATGGCGGTTGGAAACGTTTTGGGTTACGCTGCTGGATCTTACACTAACCTTCACAAA 652
Query 619 AT-TTTCCCTTTCACAGTGACTAAAGCATGCGACATCTATTGTGCAAATCTCAAGAGC-T 676
|| ||| ||||||||| |||| ||||| ||||| ||||||| || |||||||||| | |
Sbjct 653 ATGTTT-CCTTTCACAATGACAAAAGCTTGCGATGTCTATTGCGCGAATCTCAAGA-CTT 710
Query 677 GTTTCATT-ATTTCCATCACTCTCCT-CATAGTCCTCACAATCATAG-CTCTTTGGTACG 733
||||| || | |||||||||||||| | || ||||||| || | | |||| |||||||
Sbjct 711 GTTTC-TTCCTATCCATCACTCTCCTCCTTA-TCCTCACCTTC-TCGTCTCTATGGTACG 767
Query 734 TGGAAGACAAGCAATGG--T-CGCCTA-ATGCAGATTCCGACAATGAGAAAAC-TC---- 784
| ||||||| |||||| | |||| | ||| ||| || || |||||||| ||
Sbjct 768 TTAAAGACAAACAATGGTCTCCGCC-ACATGGAGA----GA-AA-GAGAAAACATCAAGT 820
Query 785 ----CCTTCTTTGGCGAGATCTTTGGAGCTTTCAAG-GTGATGAAACGTCCAATGTGGAT 839
|||||||| || |||||||||||| || || || ||||||||||| ||||||||
Sbjct 821 GTTTTTTTCTTTGGAGAAATCTTTGGAGCTGTC-AGAGTCATGAAACGTCCCATGTGGAT 879
Query 840 GCTTCTAGCCGTCACGGCCT-TGAACTGGATCGCATGGTTTCCTTTTCTTTTATACGATA 898
||||||| ||||||| | | || |||||||| |||||||| |||||||| |||||||
Sbjct 880 GCTTCTAATGGTCACGG-TTATTAATTGGATCGCTTGGTTTCCGTTTCTTTTGTACGATA 938
Query 899 CCGATTGGATGGGTCGTGAAGTGTATGGTGGAGACTCAGCA-GGAGATGA-CAAAATGAA 956
||||||||||||||||||||||||| |||||| | |||| | ||| |||| ||| ||
Sbjct 939 CCGATTGGATGGGTCGTGAAGTGTACGGTGGAAATTCAG-ATGGAAATGAGCAAGCC-AA 996
Query 957 GAAACTATACAACCACGGAATCCAAGTTGGTTCGTTGGGGTTGATGCTTAACTCTAT-CG 1015
|||||| ||| |||| ||| | || | |||| | ||||| |||||| |||| || || |
Sbjct 997 GAAACTTTACGACCAAGGAGTTCAGGCTGGTGCATTGGGATTGATGTTTAATTCAATAC- 1055
Query 1016 TTCTTGGAGTCATGTCCCTTGTTATTGGAGT-GATTAGTAAGAAAATTGGAG---CTAAA 1071
||||||| || |||| |||| | ||| | | |||| || |||||| |||| |||||
Sbjct 1056 TTCTTGGTTTCGTGTCACTTGGTGTTGAA-TCGATTGGTCGGAAAATGGGAGGAGCTAAA 1114
Query 1072 AGGCTTTGGGGA-GCTGTGAACATAATCCTCGCGGT-GTGTTTGGCAATGACAGTT-TTG 1128
| ||||||||| | |||||| | || ||||| | | ||||||| ||||| ||| |||
Sbjct 1115 CGACTTTGGGGATG-TGTGAATTTCATACTCGCCATAG-GTTTGGCCATGACGGTTCTTG 1172
Query 1129 GTTACTAAAAAGGCTGAGGAGCACCGGAAGATCGCTGGTCGGATGGCCCTT-CCTACCAA 1187
|||| || ||||| | |||||||| | ||| ||| | | | || || | ||
Sbjct 1173 -TTACGCAATCCGCTGATAACCACCGGAAAACCGCCGGT-GCTTTGTCCGGACCGAGCAG 1230
Query 1188 TGCCATCAGAGATGGAGCATTGAGTCTCTTTGCTATTCTTGGAATTCCTCTTG-CTATTA 1246
|| || | || |||| ||| ||||||||| | ||||||| || || ||| | ||||
Sbjct 1231 TGGTATTAAAGCCGGAGTATTTAGTCTCTTTACCGTTCTTGGTATCCCA-TTGGCCATTA 1289
Query 1247 CATTT-AGTATTCCATTTGCATTAGCTTCCATTATT-TCAAGCAGTTCCGGTGCCGGTCA 1304
| || ||| ||||||||||| |||| |||||| || |||| || |||||||||||| ||
Sbjct 1290 C-TTACAGTGTTCCATTTGCACTAGCGTCCATT-TTCTCAACCAATTCCGGTGCCGGCCA 1347
Query 1305 AGGACTCTCTCTAGGAGTTTTAAACATGGCAATA-GTGATACCACAAATGATTGTATCGT 1363
|||||| |||||||| |||||||| || || || || |||||||||||||| ||||| |
Sbjct 1348 AGGACTTTCTCTAGGCGTTTTAAATATAGCGATTTGT-ATACCACAAATGATAGTATCAT 1406
Query 1364 T-TGGAGTTGGTCCAATTG-ATGCGTTATTT-GGAGGTGGAAACTTACCTGGATTTGTGG 1420
| | ||| || ||| ||| | || | | || || ||||||||| ||||| ||||||||
Sbjct 1407 TCTCAAGT-GGACCA-TTGGACGC-TCACTTCGGCGGTGGAAACCTACCTTCATTTGTGG 1463
Query 1421 TTGGAGCTATAGCAGCT 1437
| |||||||| || |||
Sbjct 1464 TCGGAGCTATTGCGGCT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5