BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06180.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940051 jgi|Araly1|940051|scaffold_600595.1 1897 0.0
> Ahg940051 jgi|Araly1|940051|scaffold_600595.1
Length=1258
Score = 1897 bits (1027), Expect = 0.0
Identities = 1176/1250 (94%), Gaps = 2/1250 (0%)
Strand=Plus/Plus
Query 25 TTTCACCTCTAATGCGACGAACACAGCCACGGGAACTGGCCGTCACTGGTTTATCGGAGA 84
||||| |||||||||| ||||||| ||||| ||||||||| ||||| |||||||| ||||
Sbjct 10 TTTCAACTCTAATGCGGCGAACACGGCCACCGGAACTGGCAGTCACCGGTTTATCAGAGA 69
Query 85 ATCTCCAAGGATG-TGTTTTCCGCACGGTGAAACGAGCAGTTCTGATCGGAAACGGCTGC 143
||||||||||| | | ||| |||||||||||||||||| ||| | |||||||||||||||
Sbjct 70 ATCTCCAAGGA-GATATTTACCGCACGGTGAAACGAGCTGTTGTAATCGGAAACGGCTGC 128
Query 144 GCCGGCGCGGAGAATCAATGCATCGGTCTCCTTCGATCCTTAGGCCTCTTCGATCGCCAC 203
||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 129 GCCGGCGCGGAGAATCAGTGCATCGGTCTTGTTCGCTCCTTAGGCCTCTTCGATCGCCAC 188
Query 204 CTCTATTATAGAGTAGCTAAACCAAGAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTC 263
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 189 CTCTATTATAGAGTGGCTAGACCAAAAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTC 248
Query 264 TACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCGGATTATCCATTAACGCTACT 323
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 249 TACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCAGATTCTCCATTAACGCTACT 308
Query 324 GGAATCACGAATGTGTTTGAAGTAGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAAA 383
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 309 GGAATCACCAATGTGTTTGAGGTTGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAGT 368
Query 384 ACGTTTGAAAAGAATGGCCCGTTGTTAGTCGTGGCGTCTGGTAGTGATACTATTTCCGTC 443
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 369 ACGTTTGACAAGAATGGCCCGTTGTTAGTGGTGGCATCTGGTAGTGATACCATTTCCGTC 428
Query 444 GCAAGCTCAATAAGACGACTGGCTATGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCA 503
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 429 GCAAGCTCCATAAGACGACTAGCTAGGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCA 488
Query 504 AGGTCGCATCTTGAGAGATTTGATCTAGTGATCACACCTCAACACGATTATTTTTCTTTA 563
||||||||||| || ||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 489 AGGTCGCATCTCGATAGATTTGATCTAGTGCTCACACCTCGTCATGATTATTTTTCTTTA 548
Query 564 ACACCTGAAGGGAAGAGGCAAATTCCTTTCTTTCTCAGACCATGGGTAACTCCACGTGAA 623
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 ACACCTGAAGGGAAGATGCAAATTCCTTTCTTTCTCCGACCATGGGTAACTCCACGTGAA 608
Query 624 CATCCAGGTAGAAATGTGTTTCTCACTACTGGAGCTCTTCATTACGCCGACGCTTCTACT 683
| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 609 CCTCCAGGTAGAAATGTGTTTCTCACCACTGGAGCTCTTCATTACGCCGATGCTTCTACT 668
Query 684 CTAAGAAATGCTACATCGGAATGGAAAAACGAGTTTGCTTCGCTGCCAAAGCCTTTGGTT 743
|| ||||||||||| | ||||||||| | |||||| |||||||| |||||||||| |||
Sbjct 669 CTGAGAAATGCTACTTTGGAATGGAAGGAGGAGTTTTCTTCGCTGTCAAAGCCTTTAGTT 728
Query 744 GTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAG 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAG 788
Query 804 TTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCA 848
Query 864 AGAAGAACACCAAAGAAGGTTGTAGAAGTCATAACTGGAGAATTGAGCTCTAACTCTAAG 923
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 849 AGAAGAACACCGAAGAAGGTTGTAGAAATCATAACTGGAGAATTGAGCTCTAACTCTAAG 908
Query 924 GTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCAAT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 909 GTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCGAT 968
Query 984 ACTTTTATCATAACTGCTGACTCTATAAGTATGTTGAGCGAGGCATGTAGTACCGGGAAA 1043
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 969 ACTTTTATCATAACTGCGGACTCTATAAGTATGCTGAGCGAGGCATGTAGTACCGGGAAA 1028
Query 1044 CCCGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACT 1103
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CCTGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACT 1088
Query 1104 CTCCATGGTAGAGGAGCTGTTCGACCTTTGACCGGCAAAGAAGATATGTGTGAGAAGTGG 1163
||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1089 CTCCATGAAAGAGGAGCTGTTCGACCTTTGACTGGCAATGAAGATATGTGCGAGAAGTGG 1148
Query 1164 AGTTACTCTCCTCTTAACGATAATGTAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCC 1223
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1149 AGTTACTCTCCGCTTAGCGATAATGAAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCC 1208
Query 1224 AAGCGTGGCTGGGAAATCGAGGCATGACCGTTCTTTCCCTCCACAAGTTT 1273
|||||||||||| |||| ||| ||||||||| |||||||||| |||||||
Sbjct 1209 AAGCGTGGCTGGAAAATTGAGACATGACCGTGCTTTCCCTCCCCAAGTTT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5