BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06180.1 Length=1521 Score E Sequences producing significant alignments: (Bits) Value Ahg940051 jgi|Araly1|940051|scaffold_600595.1 1897 0.0 > Ahg940051 jgi|Araly1|940051|scaffold_600595.1 Length=1258 Score = 1897 bits (1027), Expect = 0.0 Identities = 1176/1250 (94%), Gaps = 2/1250 (0%) Strand=Plus/Plus Query 25 TTTCACCTCTAATGCGACGAACACAGCCACGGGAACTGGCCGTCACTGGTTTATCGGAGA 84 ||||| |||||||||| ||||||| ||||| ||||||||| ||||| |||||||| |||| Sbjct 10 TTTCAACTCTAATGCGGCGAACACGGCCACCGGAACTGGCAGTCACCGGTTTATCAGAGA 69 Query 85 ATCTCCAAGGATG-TGTTTTCCGCACGGTGAAACGAGCAGTTCTGATCGGAAACGGCTGC 143 ||||||||||| | | ||| |||||||||||||||||| ||| | ||||||||||||||| Sbjct 70 ATCTCCAAGGA-GATATTTACCGCACGGTGAAACGAGCTGTTGTAATCGGAAACGGCTGC 128 Query 144 GCCGGCGCGGAGAATCAATGCATCGGTCTCCTTCGATCCTTAGGCCTCTTCGATCGCCAC 203 ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 129 GCCGGCGCGGAGAATCAGTGCATCGGTCTTGTTCGCTCCTTAGGCCTCTTCGATCGCCAC 188 Query 204 CTCTATTATAGAGTAGCTAAACCAAGAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTC 263 |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 189 CTCTATTATAGAGTGGCTAGACCAAAAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTC 248 Query 264 TACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCGGATTATCCATTAACGCTACT 323 ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 249 TACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCAGATTCTCCATTAACGCTACT 308 Query 324 GGAATCACGAATGTGTTTGAAGTAGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAAA 383 |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 309 GGAATCACCAATGTGTTTGAGGTTGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAGT 368 Query 384 ACGTTTGAAAAGAATGGCCCGTTGTTAGTCGTGGCGTCTGGTAGTGATACTATTTCCGTC 443 |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 369 ACGTTTGACAAGAATGGCCCGTTGTTAGTGGTGGCATCTGGTAGTGATACCATTTCCGTC 428 Query 444 GCAAGCTCAATAAGACGACTGGCTATGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCA 503 |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 429 GCAAGCTCCATAAGACGACTAGCTAGGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCA 488 Query 504 AGGTCGCATCTTGAGAGATTTGATCTAGTGATCACACCTCAACACGATTATTTTTCTTTA 563 ||||||||||| || ||||||||||||||| ||||||||| || ||||||||||||||| Sbjct 489 AGGTCGCATCTCGATAGATTTGATCTAGTGCTCACACCTCGTCATGATTATTTTTCTTTA 548 Query 564 ACACCTGAAGGGAAGAGGCAAATTCCTTTCTTTCTCAGACCATGGGTAACTCCACGTGAA 623 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 549 ACACCTGAAGGGAAGATGCAAATTCCTTTCTTTCTCCGACCATGGGTAACTCCACGTGAA 608 Query 624 CATCCAGGTAGAAATGTGTTTCTCACTACTGGAGCTCTTCATTACGCCGACGCTTCTACT 683 | |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 609 CCTCCAGGTAGAAATGTGTTTCTCACCACTGGAGCTCTTCATTACGCCGATGCTTCTACT 668 Query 684 CTAAGAAATGCTACATCGGAATGGAAAAACGAGTTTGCTTCGCTGCCAAAGCCTTTGGTT 743 || ||||||||||| | ||||||||| | |||||| |||||||| |||||||||| ||| Sbjct 669 CTGAGAAATGCTACTTTGGAATGGAAGGAGGAGTTTTCTTCGCTGTCAAAGCCTTTAGTT 728 Query 744 GTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAG 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 GTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAG 788 Query 804 TTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCA 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 TTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCA 848 Query 864 AGAAGAACACCAAAGAAGGTTGTAGAAGTCATAACTGGAGAATTGAGCTCTAACTCTAAG 923 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 849 AGAAGAACACCGAAGAAGGTTGTAGAAATCATAACTGGAGAATTGAGCTCTAACTCTAAG 908 Query 924 GTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCAAT 983 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 909 GTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCGAT 968 Query 984 ACTTTTATCATAACTGCTGACTCTATAAGTATGTTGAGCGAGGCATGTAGTACCGGGAAA 1043 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 969 ACTTTTATCATAACTGCGGACTCTATAAGTATGCTGAGCGAGGCATGTAGTACCGGGAAA 1028 Query 1044 CCCGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACT 1103 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 CCTGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACT 1088 Query 1104 CTCCATGGTAGAGGAGCTGTTCGACCTTTGACCGGCAAAGAAGATATGTGTGAGAAGTGG 1163 ||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 1089 CTCCATGAAAGAGGAGCTGTTCGACCTTTGACTGGCAATGAAGATATGTGCGAGAAGTGG 1148 Query 1164 AGTTACTCTCCTCTTAACGATAATGTAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCC 1223 ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1149 AGTTACTCTCCGCTTAGCGATAATGAAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCC 1208 Query 1224 AAGCGTGGCTGGGAAATCGAGGCATGACCGTTCTTTCCCTCCACAAGTTT 1273 |||||||||||| |||| ||| ||||||||| |||||||||| ||||||| Sbjct 1209 AAGCGTGGCTGGAAAATTGAGACATGACCGTGCTTTCCCTCCCCAAGTTT 1258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56944916275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5