BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G06200.1 Length=609 Score E Sequences producing significant alignments: (Bits) Value Ahg892543 jgi|Araly1|892543|Al_scaffold_0006_539 981 0.0 > Ahg892543 jgi|Araly1|892543|Al_scaffold_0006_539 Length=609 Score = 981 bits (531), Expect = 0.0 Identities = 583/609 (96%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 1 ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGTCATCAAAGGC 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGCCATCAAAGGC 60 Query 61 AAAGCTCCTCTCCTCGGTTTAGCCAGAGACCACACTGGCTCTGGAGGTTACAAGAGAGGC 120 |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| Sbjct 61 AAAGCTCCTCTCCTTGGTTTAGCCAGAGACCACACGGGCTCAGGGGGTTACAAGAGAGGT 120 Query 121 CTTTCCATTTTCGATTTCCTTCTCCGTTTAGCTGCCATTGTAGCTGCCTTAGCTGCTGCT 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 121 CTTTCCATTTTCGATTTCCTTCTCCGTTTAGCCGCCATTGTAGCTGCCTTAGCTGCTGCT 180 Query 181 GCCACAATGGGAACTAGTGACGAGACACTCCCTTTCTTCACTCAGTTTTTGCAGTTCGAA 240 ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 181 GCCACAATGGGGACTAGTGACGAGACTCTCCCTTTCTTCACTCAGTTTTTACAGTTCGAA 240 Query 241 GCTAGCTACGATGATCTTCCAACTTTCCAGTTCTTTGTCGTTGCCATTGCAATAGTTGCA 300 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 241 GCTAGCTACGACGATCTTCCAACTTTCCAGTTCTTTGTGGTTGCCATTGCAATAGTCGCA 300 Query 301 GGTTACCTTGTCCTGTCACTTCCCTTCTCAGTCGTCACAATTGTTCGTCCTCTAGCCGTC 360 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 301 GGTTACCTTGTCCTGTCTCTTCCCTTCTCAGTCGTCACGATTGTTCGTCCTCTAGCCGTT 360 Query 361 GCTCCGAGACTTCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTTTGGACACTGCAGCT 420 |||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 361 GCTCCGAGGCTCCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTCTGGACACTGCGGCT 420 Query 421 GCTTCCGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGG 480 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCTTCTGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGG 480 Query 481 CTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTGGTTTCT 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 481 CTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTCGTCTCT 540 Query 541 GCCTTTGCCTCTGTCACCTTTTTAGCCATCCTTGTCGTTATCTCCGGTGTTTCTCTCAAA 600 ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct 541 GCCTTTGCCTCTGTCACGTTTTTAGCCATCCTTGTCGTCATCTCCGGTGTCTCTCTCAAA 600 Query 601 CGACCCTAA 609 ||||||||| Sbjct 601 CGACCCTAA 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22263783528 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5