BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06200.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892543 jgi|Araly1|892543|Al_scaffold_0006_539 981 0.0
> Ahg892543 jgi|Araly1|892543|Al_scaffold_0006_539
Length=609
Score = 981 bits (531), Expect = 0.0
Identities = 583/609 (96%), Gaps = 0/609 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGTCATCAAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGCCATCAAAGGC 60
Query 61 AAAGCTCCTCTCCTCGGTTTAGCCAGAGACCACACTGGCTCTGGAGGTTACAAGAGAGGC 120
|||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 61 AAAGCTCCTCTCCTTGGTTTAGCCAGAGACCACACGGGCTCAGGGGGTTACAAGAGAGGT 120
Query 121 CTTTCCATTTTCGATTTCCTTCTCCGTTTAGCTGCCATTGTAGCTGCCTTAGCTGCTGCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTTTCCATTTTCGATTTCCTTCTCCGTTTAGCCGCCATTGTAGCTGCCTTAGCTGCTGCT 180
Query 181 GCCACAATGGGAACTAGTGACGAGACACTCCCTTTCTTCACTCAGTTTTTGCAGTTCGAA 240
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GCCACAATGGGGACTAGTGACGAGACTCTCCCTTTCTTCACTCAGTTTTTACAGTTCGAA 240
Query 241 GCTAGCTACGATGATCTTCCAACTTTCCAGTTCTTTGTCGTTGCCATTGCAATAGTTGCA 300
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 GCTAGCTACGACGATCTTCCAACTTTCCAGTTCTTTGTGGTTGCCATTGCAATAGTCGCA 300
Query 301 GGTTACCTTGTCCTGTCACTTCCCTTCTCAGTCGTCACAATTGTTCGTCCTCTAGCCGTC 360
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GGTTACCTTGTCCTGTCTCTTCCCTTCTCAGTCGTCACGATTGTTCGTCCTCTAGCCGTT 360
Query 361 GCTCCGAGACTTCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTTTGGACACTGCAGCT 420
|||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 361 GCTCCGAGGCTCCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTCTGGACACTGCGGCT 420
Query 421 GCTTCCGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTCTGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGG 480
Query 481 CTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTGGTTTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 481 CTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTCGTCTCT 540
Query 541 GCCTTTGCCTCTGTCACCTTTTTAGCCATCCTTGTCGTTATCTCCGGTGTTTCTCTCAAA 600
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 541 GCCTTTGCCTCTGTCACGTTTTTAGCCATCCTTGTCGTCATCTCCGGTGTCTCTCTCAAA 600
Query 601 CGACCCTAA 609
|||||||||
Sbjct 601 CGACCCTAA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5