BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06210.1
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487428 jgi|Araly1|487428|fgenesh2_kg.6__562__AT5G06210.1 802 0.0
> Ahg487428 jgi|Araly1|487428|fgenesh2_kg.6__562__AT5G06210.1
Length=556
Score = 802 bits (434), Expect = 0.0
Identities = 523/564 (93%), Gaps = 14/564 (2%)
Strand=Plus/Plus
Query 1 AGTCCTCTCGCGACGCATAAATTTTAATGGCGGCGCTCGCAAGGATCGGTGGCCGGCACC 60
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTCCTCTCGCGACACATTAATTTTAATGGCGGCGCTCGCAAGGATCGGTGGCCGGCACC 60
Query 61 TGAAATCCGTCTGCTTAATAAACTCCTCCGCCTCATGTTTCTTCACACAACGCCGTGGTG 120
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 61 TGAAATCCGTCGGCTTAATAAACTCCTCCGCCTCATGTTTCTTCACTCAACGCCGTGGCG 120
Query 121 TTGCTTCCAAGCTCTTTATTGGTGGATTATCGTTTTGCACTACAGAGCAAGGATTGTCTG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TTGCTTCCAAGCTCTTTGTTGGTGGATTATCGTTTTGCACTACAGAGCAAGGATTATCTG 180
Query 181 AGGCATTTTCCAAATGTGGCCAAGTTGTTGAAGCACAAATAGTTATGGACAGAGTCTCTG 240
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 AGGCATTCTCGAAATGTGGCCAAGTTGTTGAAGCTCAAATAGTTATGGACAGAGTCTCTG 240
Query 241 ACAGATCAAAAGGTTTCGGTTTCGTGACATTTGCTTCTGCTGACGAAGCTCAGAAAGCTT 300
||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 241 ACAGATCAAAAGGTTTCGGCTTCGTAACATTTGCTTCTGTTGATGAAGCTCAGAAAGCTT 300
Query 301 TGATGGAGTTCAACGGACAGCAATTAAACGGCCG-GACGATATTTGTGGACTACGCAAAG 359
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 301 TGATGGAGTTCAACGGACAGCAATTTAACGGCCGTGT-GATATTTGTGGACTACGCAAAG 359
Query 360 GCGAAGCAGTCTCTTGGTGGTGGTGGTGGCTATCCAATAGCTAGAGGACCGCCTGATCCA 419
||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GCGAAGCAGAGT-TT--TGGTGGTGGTCGCTATCCAATAGCTAGAGGACCGCCTGATCCA 416
Query 420 GCCGTAA-TAGCTGCCACTAGAACAACCGAAACATCGAAAAGCGACTAACAAAATCGAAG 478
| | || |||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 417 GTGG-AAGTAGCTGCCAC--GA-CAACCGAAACATCGAAAAACGACTAACAAAATCGAAG 472
Query 479 ATAGCAAATTGCTGGACACTGCTGTTGCTATGTTTCTTGGATTTTACTTGTG-TGC-ATG 536
|||||||||||||||||||| |||||||||| || |||| |||||||||||| || |||
Sbjct 473 ATAGCAAATTGCTGGACACTACTGTTGCTATATTACTTGCATTTTACTTGTGATGATATG 532
Query 537 TGTAAGAG--ATGAGCAAGCTTCG 558
|||||||| ||||||||||||||
Sbjct 533 TGTAAGAGCCATGAGCAAGCTTCG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25427985639
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5