BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06220.2
Length=3119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487429 jgi|Araly1|487429|fgenesh2_kg.6__563__AT5G06220.1 2161 0.0
Ahg478500 jgi|Araly1|478500|fgenesh2_kg.3__1201__AT3G11560.3 1199 0.0
> Ahg487429 jgi|Araly1|487429|fgenesh2_kg.6__563__AT5G06220.1
Length=2746
Score = 2161 bits (1170), Expect = 0.0
Identities = 1276/1327 (96%), Gaps = 7/1327 (1%)
Strand=Plus/Plus
Query 1798 TTTGGCTGTAACAGAAGCGAGTTTTATTGACATGACCTCATCCTCAACTGATGGAGAGTC 1857
|||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1422 TTTGGCAGTAACAAAAGCGGGTTTTATTGACATGAACTCATCCTCAACTGATGGAGAGTC 1481
Query 1858 AAGCTCATTTGACAAGGCTCTAGAGAGTGTAGATGGAGCTCTCGTTAGACTGGAAAGCTT 1917
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1482 AAGCTCATTTGACAAGGCTCTAGAGAGTGTAGATGAAGCTCTCGTGAGACTGGAAAGCTT 1541
Query 1918 GCTACAGCAGTTGCATGCATCAAGCTCATCTTCTGGAAAAGAGCAAATAAAAGCTGCTTG 1977
||||||| | |||||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 1542 GCTACAGAAATTGCATGCATCAAGCTCAGCTTCTGGAAAGGAACAAATAAAAGCTGCTTG 1601
Query 1978 CTCTGACCTAGAAAAGATAAGGAAGCTCAAGAAAGAGGCTGAATTTTTAGAGGCATCTTT 2037
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CTCTGACCTAGAAAAAATAAGGAAGCTCAAGAAAGAGGCTGAATTTTTAGAGGCATCTTT 1661
Query 2038 CAGAGCCAAAGCAGCTTCCCTCCAAGAGGGAGGTGGTGACAGTGACTCTCAGGAGTACTC 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 CAGAGCCAAAGCAGCTTCCCTCCAAGAGGGAGGTGGTGACAGTGACTCTCAGGAGTACTC 1721
Query 2098 TGAGGAACAAAGCCAGTATCTAAGAGGAAAAGACCCAAAGAATTCAATAAATTCTGTAGA 2157
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1722 TGAGGAACAAAGCCAGTATCTAAAAGGAAAAGACTCAAAGAATTCAATAAATTCTGTAGA 1781
Query 2158 TCAAGGCAC--A-AGGGATAGTGGATTCTGGGGGTTCTTTGTTCGTACTCCAA-AAGGGA 2213
||||||||| | |||||| ||||||||||||||||||||||||| ||||||| || |||
Sbjct 1782 TCAAGGCACAAATAGGGATCGTGGATTCTGGGGGTTCTTTGTTCGCACTCCAAGAA-GGA 1840
Query 2214 AGCCTGGCCCCGAGTCATTGACAGATAAATATTTTGAGAAATCCAGAGAAAATGTAGATA 2273
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1841 AGCCTGGCCCCGAGTCATTGACAGATGAATATTTTGAGAAATCCAGAGAAAATGTTGATA 1900
Query 2274 ATGTGGATTCCAACCCCAATGAGATCTATCGGTTCGAACTTCTAAGGAACGAACTGATAG 2333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 GTGTGGATTCCAACCCCAATGAGATCTATCGGTTCGAACTTCTAAGGAACGAACTGATAG 1960
Query 2334 AGCTGGAGAAGCGTGTCCAAGGAAGTACAGATGAGTCGGGACGAACCTCTGAAGATCTGC 2393
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 1961 AGCTGGAGAAGCGTGTCCAAGGAAGCACAAATGAGTCGGGACGAACCTCTGAAGATCTTC 2020
Query 2394 CTAAATCAAGCAGCAGTACGAAAGGTGTGCAGTTGGTTCAGAGCTCAAAGAAAGAAAACG 2453
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2021 CTAAATTAAGCAGCAGTATGAAAGGTGTGCAGTTGGTTCAGAGCTCAAAGAAAGAAAGCG 2080
Query 2454 TCATTGAGAAAACTCTTGACCAACTTAAAGATGCCACTACGGACGTGTGGCAGGGTACTC 2513
||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 2081 TCATTGAGAAAACTCTTGACCAACTTAAAGAAACCAGTACGGACGTGTGGCAAGGTACTC 2140
Query 2514 AGCTTCTTGCGTTTGATTCAGCTGCTGCTATGGAGCTCCTTCGGAGGTCTGTGGTAGGAG 2573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 AGCTTCTTGCGTTTGATTCAGCTGCTGCTATGGAGCTCCTTCGGAGGTCTGTGGTAGGAG 2200
Query 2574 ATGAATTAACAGAGAAAGAAAAGAAAGCACTACGCAGAACCATGACCGACTTAGCATCAG 2633
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 2201 ATGAATTAACAGAGAAAGAGAAGAAAGCCCTACGCAGAACCATGACTGACTTAGCATCAG 2260
Query 2634 TTGTTCCCATTGGTGTTCTTATGCTTCTTCCTGTCACAGCAGTTGGTCATGCGGCTATGC 2693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 TTGTTCCCATTGGTGTTCTTATGCTTCTTCCTGTCACAGCAGTTGGTCATGCGGCTATGC 2320
Query 2694 TTGCTGCAATTCAGAGATATGTGCCAGGCTTGATACCTTCGACCTACGGAGCCGAAAGGT 2753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 TTGCTGCAATTCAGAGATATGTGCCAGGCTTGATACCTTCGACCTACGGAGCCGAAAGGT 2380
Query 2754 TGAACCTGTTGAGACAGCTCGAGAAGGTCAAGCAAATGCAAACAAATGAAACTGAGCCTG 2813
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2381 TGAACCTGTTGAGACAGCTCGAGAAGGTCAAGCAAATGCAAACAAATGAAACAGAGCCTG 2440
Query 2814 AAGAAGGCATTGATGA-ACCAGAATCATGACTAGATCAAGAAACATAAAATCAGTATTTA 2872
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||| | ||
Sbjct 2441 AAGAAGGCATTGATGATAC-AGAATCATGACTAGATCAAGAAACATAAATTCAGTCTATA 2499
Query 2873 CCTCAAGGAATCACTTTGTTCTATAGTTCATTGACAAGAGTTGCGCATAGAGGATCTCAT 2932
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2500 CCTTAAGAAATCACTTTGTTCTATAGTTCATTGACAAGAGTTGCGCATAGAGAATCTCAT 2559
Query 2933 TCCATGTATCTGGTACACCGGGTAGGCACCAGTGGCTACAGTCTTGAGGAACATCAACAG 2992
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2560 TCCATGTATCTGGTACGCCCGGTAGGCACCAGTGGCTACAGTCTTGAGGAACATCAACAG 2619
Query 2993 AAGTGCCTTGCTCTCGATACCGAGAAATATGACCATCTTTCCTAAACTCTGTCAGATATG 3052
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2620 AAGTGCCTTGCTCTCGATACCGAGAAATATGACCATCTTTCCTGAACTCTGTCAGATATG 2679
Query 3053 TAATGTTCAGAAACTTAACCTTACTATGTCGATATCTCATTTCTTCAATTACTTTATAGA 3112
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2680 TAATGTTCAGAAACTTAAGCTTACTATGTCGATATCTCATTTCTTCAATTACTTTATAGA 2739
Query 3113 TATATTC 3119
||||||
Sbjct 2740 CATATTC 2746
Score = 1930 bits (1045), Expect = 0.0
Identities = 1224/1306 (94%), Gaps = 29/1306 (2%)
Strand=Plus/Plus
Query 170 ATGTCCGTTGGAACCTTGATTTCGTGCAGAAGAGTGCTACAATTGGATTATATATCAAAC 229
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || | |
Sbjct 1 ATGTCCGTTGGAACCTTTATTTCCTGCAGAAGAGTGCTACAATTGGATTATATTTCTAGC 60
Query 230 TGCTGCGGAAATTCCAGGACTCAATTGTTTGTGACC--T-ATG--AT-G---ATAAGAAC 280
|||||||||||||| |||| ||| |||||||||||| | ||| | | | ||||||
Sbjct 61 TGCTGCGGAAATTCGAGGAGTCAGTTGTTTGTGACCTATCATGTTCTGGACAACAAGAAC 120
Query 281 TACTTTCTTCAGAGAAAACTTTTTGGAAACAAGAAAATGA----G--T---TCACGGAGG 331
||||||||||||||||||||||||||||||||||| |||| | | || ||||||
Sbjct 121 TACTTTCTTCAGAGAAAACTTTTTGGAAACAAGAAGATGAGTTGGTATAAATCGCGGAGG 180
Query 332 ACTACCCAGCCTTTTCTCCTTGCATCTGCTGAAGATGGAGTGGCTGTTAAT---GG---- 384
|||| ||| ||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 181 ACTATGCAGTCTTTTCTCCTTGCATCTGCTGAAGACGGAGTCGCTGTTAATGGGGGTTCC 240
Query 385 --GTCAAGAGCTAGCGATGATGTTCAGGAGATGAGGGCCAA-ACTCAGTGGATCACTACA 441
||||||| | |||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct 241 CAGTCAAGACCCAGCGATGATGTTGAGGAGATGAGGG-CAATACTCAGTGGATCACTACA 299
Query 442 AGATGAATATAGCTGTGGTGAACTTATTCAGTCTTTGCATGATGCTGCCAGGACTTTTGA 501
||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 300 AGATGAATACAGCTGTGGTGAACTCATTCAATCTTTGCATGATGCTGCCAGAACTTTTGA 359
Query 502 ACTGGCTCTTAAAGAGAAGATATCTTCTTCGAGATTACCATGGTTTTCAGCAGCCTGGCT 561
|||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 360 ACTGGCACTTAAAGAGAAGATTTCATCTTCCAGATTACCATGGTTTTCAGCAGCCTGGCT 419
Query 562 CGGAGTTGATAGAAATGCATGGGTTAAGACGTTTTCTTATCAGGCTTCCGTGTATTGCTT 621
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGGAGTTGATAGAAATGCATGGGTTAAGACATTTTCTTATCAGGCTTCCGTGTATTGCTT 479
Query 622 ACTACAAGCTGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGT 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTACAAGCTGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGT 539
Query 682 CTTTGTACAAAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAA 741
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTTTGTGCAAAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAA 599
Query 742 ACTATCTTCCAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGGGCAAGTTCCTTCGGC 801
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 ACTATCTTCCAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGAGCAAGTTCCTTCGGC 659
Query 802 GGTGACATCTTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCTACTTCTGT 861
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GGTGACATCTTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCAACTTCTGT 719
Query 862 CTATGTCAAAAGCAATTCCACAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCT 921
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTATGTCAAAGGCAAGTCCTCAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCT 779
Query 922 TGTGCTGAATTGCATCGCAGCAGTGACAAAACTTGGCCCAACAAAACTTTCGTGCCCGCC 981
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 780 TGTGCTGAATTGCATCGCAGCAGTGACAAAACTTGGCCCGACAAAAATTTCGTGCCCGCC 839
Query 982 CTTCTTTTCTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGGGTTTGT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 CTTCTTTTCTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGACTTTGT 899
Query 1042 TCCACTTCCTCAGACCTATCATTCAATGAAAACCCTTGGTCTTCGCAGAGAATTTCTTCT 1101
|||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 900 TCCACTACCTCAGGCCTATCATTCAATGAAAAGCCTCGGTCTTCGCAGAGAATTTCTTGT 959
Query 1102 TCATTTTGGACCTCGGGCAGCAGCATGCAGAGTAAAAAGTGACTGTGATACAGATGAGGT 1161
||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 960 TCATTTTGGACCTCGGGCAGCGGCATGCAGAGTAAAAAGTGACTGCGGTACAGATGAGGT 1019
Query 1162 TGTCTTCTGGGTAGATCTTATACAAAACCAACTGCTGAGGGCTATTGATCGGGAGAAAAT 1221
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGTCTTCTGGGTCGATCTTATACAAAACCAACTGCTGAGGGCTATTGATCGGGAGAAAAT 1079
Query 1222 ATGGTCAAGATTAATAACGTCTGAAAGTATAGAGGTTTTGGATAGAGATTTAGCTATTTT 1281
|||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1080 ATGGTCAAGATTAACAACGTCTGAAAGTATCGAGGTTTTGGAAAGAGATTTAGCTATTTT 1139
Query 1282 TGGATTCTTCATTGCCTTGGGCAAGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTCAG 1341
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGGATTCTTCATTGCCTTGGGCAGGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTCAG 1199
Query 1342 TTCGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCACTTCATTGGGGGAAGTCTCCTACA 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCACTTCATTGGGGGAAGTCTCCTACA 1259
Query 1402 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAG 1447
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAG 1305
Score = 124 bits (67), Expect = 3e-27
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1602 AGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATCCTTCTAATGTCAAGGCAGCAAAAT 1661
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1304 AGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATCCTTCTAATGTCAAGGCCGCGAAAT 1363
Query 1662 TCTTATCCAAGGG 1674
|||||||||||||
Sbjct 1364 TCTTATCCAAGGG 1376
> Ahg478500 jgi|Araly1|478500|fgenesh2_kg.3__1201__AT3G11560.3
Length=3183
Score = 1199 bits (649), Expect = 0.0
Identities = 1130/1357 (83%), Gaps = 54/1357 (4%)
Strand=Plus/Plus
Query 350 CTT-GCATCTGCTGAAGATGGAGTGGCTGTTAATGG--GT-C-AAG---AG--CTAGCGA 399
||| |||||||||||||||||||||||| | ||||| || | ||| || |||| |
Sbjct 301 CTTGGCATCTGCTGAAGATGGAGTGGCTATCAATGGAAGTCCTAAGCCAAGATCTAG-TA 359
Query 400 -TGATGTT-CAGGAGATGAGGGCCAAACTCAGTGGATCACT-ACAAGATGAATATAGCTG 456
| || || ||| |||||| | || ||| |||||| | |||||||||| | ||||
Sbjct 360 GTAAT-TTGGGGGAAATGAGGACTAATTTCACCGGATCA-TCACAAGATGAAAACAGCTC 417
Query 457 TGGTGAACTTATTCAGTCTTTGCATGATGCTGCCAGGA-CTTTTGAACTGGCTCTTAAAG 515
| || |||||| |||||||||||||||||||| | || || ||||| |||| ||| ||
Sbjct 418 TAATGGACTTATCCAGTCTTTGCATGATGCTGCTA-GATCTATTGAATTGGCAGTTAGAG 476
Query 516 AGAAGA-TATCTTCTTCGAGATTACCATGGTTTTCAGCAG-CCTGGCTCGGAGTTGATAG 573
|||||| || || | || ||||| ||||||||| | || | ||||||| || | |||||
Sbjct 477 AGAAGATTA-CTCCGTCCAGATTTCCATGGTTTCCTGC-GACCTGGCTTGGTGCTGATA- 533
Query 574 AA-ATGCATGGGTTAAGACGT-TTTCTTATCAGGCTTC-CGTGTATTGCTTACTACAAGC 630
|| |||||||||| ||||| | |||| ||||||||||| | |||| | ||||||||||||
Sbjct 534 AATATGCATGGGTGAAGAC-TCTTTCGTATCAGGCTTCTC-TGTACTCCTTACTACAAGC 591
Query 631 TGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGTCTTTGTACA 690
| |||||| ||||||||||||| || | |||||||| ||| ||||||||||||| ||
Sbjct 592 AGTTAATGAGATTTCATCTAGAGGCAATTACAGAGACGAGGATATTAATGTCTTTGTTCA 651
Query 691 AAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAAACTATCTTC 750
|||||| |||||||||||||||||||| ||||| | ||||||||| || || ||||||||
Sbjct 652 AAGGAGCTTATCACGCCAAGCTGCTCCCCTTGAGAATATGATGCGAGAGAATCTATCTTC 711
Query 751 CAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGGGCAAGTTCCTTCGGCGGTGACATC 810
|| |||||| ||||| |||| ||||||||||| | |||| ||||||| | |||||||||
Sbjct 712 CAAACATCCTAAAGCCTATGAATGGTTTTGGTCCGAGCAACTTCCTTCCGTGGTGACATC 771
Query 811 TTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCTACTTCTGTCTATGTCAA 870
||||||||||| | |||||||||||||||| |||||| |||| ||||||||||||| |||
Sbjct 772 TTTTGTGAATTATATTGAGGGGGACCAACGTTTTGTTGCTGCCACTTCTGTCTATG-CAA 830
Query 871 AA-GCAATTCCACAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCTTGTGCTGA 929
|| | || ||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 831 AAGGAAAGTCCGCAGCCGCAAGTAATGAGATTGAGGTGTCACTTCTCATGCTTGTGCTCA 890
Query 930 ATTGCATCGCAGCAGTGACAAAACTTGGCCCAACAAAACTTTCGTGCCCGCCCTTCTTTT 989
||||||| |||||| | || ||| ||||||| ||||| |||| |||||||||||||| |
Sbjct 891 ATTGCATTGCAGCAATCACGAAAGTTGGCCCGGCAAAATTTTCCTGCCCGCCCTTCTTCT 950
Query 990 CTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGGGTTTGTTCCACTTC 1049
|| ||||||||||||| || || ||||||||||| ||| |||| | || |||||||| |
Sbjct 951 CTATGATTCCAGATACAACTGGAAGATTGATGGAAAAACTTGTAGACTTCGTTCCACTCC 1010
Query 1050 CTCAGACC-TATCATTCAATGAAAACCCTTGGTCTTCGCAGAGAATTTCTT-CTTCATTT 1107
|||| | | ||||||||||| |||| | | || || | ||||| |||||| || |||||
Sbjct 1011 CTCA-AGCGTATCATTCAATCAAAAGCATAGGCCTACAAAGAGAGTTTCTTACT-CATTT 1068
Query 1108 TGGACCTCGGGCAGCAGCATGCAGAGTAAAAAGTGAC-TGTGATACAGATGAGGTTGTCT 1166
||| ||||| ||||||| |||||||| || ||||| | || ||||||||| ||||| |
Sbjct 1069 TGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT-TGCTACAGATGAAGTTGTTT 1127
Query 1167 TCTGGGTAGATCTTATACA-AAACCAACTGCTGAGGGCTATTGATCGGGAGAAAATATGG 1225
||||| | ||||||||||| |||| |||||| | ||||||| ||| ||||||||||||||
Sbjct 1128 TCTGGATCGATCTTATACAGAAAC-AACTGCAGCGGGCTATAGATAGGGAGAAAATATGG 1186
Query 1226 TCAA-GATTAATAACGTCTGAAAGTATAGAGGTTTTGGATAGAGATTTAGCTATTTTTGG 1284
|||| | |||| ||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1187 TCAAAG-TTAACAACATCCGAAAGTATAGAGGTTTTGGAGAGAGATTTAGCAATTTTTGG 1245
Query 1285 ATTCTTCATTGCCTTGGGCAAGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTC-AGTT 1343
|||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| | ||
Sbjct 1246 ATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGCTGCAAATGGTTTTGA-TT 1304
Query 1344 CGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCA-CTTCATTGGGGGAAGTC-TCCTACA 1401
| |||||||||||| ||||||||||||||||||| ||| |||||||| || | |||| |
Sbjct 1305 CTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTT-ATTGGGGGCAG-CGTCCTGTA 1362
Query 1402 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAGGTTGTCTGTGAAGA 1461
|||||||| |||||| |||||||||| |||||| |||||||||||||||| || |||||
Sbjct 1363 CTATCCTCAACTTTCATCCATCAGTTCATACCAGCTGTATGTAGAGGTTGTTTGCGAAGA 1422
Query 1462 ACTAGATTGGATTCCTTTCTATCCAGCCAGAAA--GGACTCCCAGCCAGCCGAA-CAATC 1518
|||||| ||||||||||||||||||| || | | || | | ||||| || || |||||
Sbjct 1423 ACTAGAATGGATTCCTTTCTATCCAGACA-ATACTGG-CACACAGCCT-CCAAAACAATC 1479
Query 1519 ACACGGGCATAAAAGCAGACCACAAGGGCCACCTAATTATGATGCTCTTCCACAGA-TAT 1577
||| |||||||| |||| | || |||| |||||||||||||| | | |||| || | | |
Sbjct 1480 ACATGGGCATAAGAGCAAAACAGAAGGACCACCTAATTATGAAGTTATTCCCCA-ACTGT 1538
Query 1578 TGAATGTTTGCTCTTATTGGCTACAGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATC 1637
|| ||||||||||||||||||||||||| |||||||| || || |||||||| |||||||
Sbjct 1539 TGGATGTTTGCTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATGGCCAGAGAATC 1598
Query 1638 CTTCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGG 1674
| |||||||||||||||||||||||||||||||||||
Sbjct 1599 CATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGG 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117813127785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5