BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06240.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487431 jgi|Araly1|487431|fgenesh2_kg.6__565__AT5G06240.1 1177 0.0
Ahg919978 jgi|Araly1|919978|scaffold_101259.1 172 3e-42
> Ahg487431 jgi|Araly1|487431|fgenesh2_kg.6__565__AT5G06240.1
Length=718
Score = 1177 bits (637), Expect = 0.0
Identities = 693/720 (96%), Gaps = 4/720 (1%)
Strand=Plus/Plus
Query 25 ACTGAGCTGCGATCGGCGACTGTCTCTTGTCCGGGATAGTGAAAGATGAAGCTGAAGGTT 84
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ACTGAGCTGCGATCGGCGACTGTCTCTTCTCCGGGATAGTGAAAGATGAAGCTGAAGGTT 60
Query 85 GTGTATCGTAAGGTCTCCGATTACA-TCTGTTACGATCTGAAAGAAATCGTCTTACCTTC 143
||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 61 GTGTATCGTAAGGTCTCCGATTACATTC-GTTACGATCTCAAAGAAATCGTCTTACCTTC 119
Query 144 ATCACTTCCCGATCCTCCTCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATT 203
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCACTTCCCGATCCTCCCCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATT 179
Query 204 CCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCC 263
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTGCGAGATATAGGTCC 239
Query 264 TGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAA 323
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAACCTAAAAAACAAGCGAA 299
Query 324 AGAGGCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGCAT 383
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 AGAGACAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGAAT 359
Query 384 GGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACACGAGCTTCTAATTATAAAGA 443
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 360 GGAGACTTTAAGGCCTGCTTTACATCGTCTGTACATGACACGAGCTTCTCATTATAAAGA 419
Query 444 TGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCTGCAGCAAGTTATGCAGAATAA 503
||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct 420 TGCTCTTGCAAGCTTTATAAAAGGTTACCATGAGGGTTTGCAGCAAGTTATGCAGAGTAA 479
Query 504 AGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTCCAAAAAGACTACCTGACCTTT 563
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 AGCAGAGTCTGAAGCCCCTGCAGATGAAACTGACAAGTCCAAAAAGACTACCTGACCTTT 539
Query 564 TAGTTAGCTCCAAAAGCAGGATTTATTTTGTGAATGCGAGTATGTACGTAGCTAGATCTT 623
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 540 TAGTTAGCTCCAAAAGCAGGGTTTAATATGTGAATGCGAGTATGTACGTAGCTAGATCTT 599
Query 624 GGGTTCTTTGATGGTGTACCACAACAATCTAAAGATTTCTATCAACTACGTAGTCTTTCA 683
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 600 GGGTTCTTTGATGGTGTACCACAACAATCTAAAGATTTCTATCAACTACTTAGTCTTCCA 659
Query 684 TGCTCAATGTACCCTATTTGTGAAGTAACTTCTAGTAAACaaaaaa-aTTTAGCTTGACA 742
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 660 TGCTCAATGTACCCTATTTGTGAAGTAACTTCTAG-AAACCAAAAACATTTAGCTTGACA 718
> Ahg919978 jgi|Araly1|919978|scaffold_101259.1
Length=377
Score = 172 bits (93), Expect = 3e-42
Identities = 136/154 (88%), Gaps = 13/154 (8%)
Strand=Plus/Plus
Query 208 GTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCCTGAA 267
|||||||||||||||||||||||||||||||||||| | || | | | |||||
Sbjct 137 GTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGC----T-AG-G---T---T-CTGAA 183
Query 268 CTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAG 327
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 184 CTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAACCTAAAAGACAAGTGAAAGAG 243
Query 328 GCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTG 361
|||||| ||||||||||||||||||||||||||
Sbjct 244 ACAGAGAGCGAGCCCTCTGTTTTGGAAGATCTTG 277
Score = 76.8 bits (41), Expect = 2e-13
Identities = 46/48 (96%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 67 AAGATGAAGCTGAAGGTTGTGTATCGTAAGGTCTCCGATTAC-ATCTG 113
||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 52 AAGTTGAAGCTGAAGGTTGTGTATCGTAAGGTCTCCGATTACGATCTG 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5