BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06250.2
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487432 jgi|Araly1|487432|fgenesh2_kg.6__566__AT5G06250.2 1426 0.0
> Ahg487432 jgi|Araly1|487432|fgenesh2_kg.6__566__AT5G06250.2
Length=893
Score = 1426 bits (772), Expect = 0.0
Identities = 860/901 (95%), Gaps = 11/901 (1%)
Strand=Plus/Plus
Query 1 ACCTAACCCTCTCTCCCTATACTCTCCATTCGCTCTCTCTCTTTCGCTTTCTATCTCCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCTAACCCTCTCTCCCTATACTCTCCATTCGCTCTCTCTCTTTCGCTTTCTATCTCCTA 60
Query 61 GAAAAAATGTCAGTCAACCATTACTCCACAGACCACCACCACACTCTCTTGTGGCAGCAA 120
| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 G-AAAAATGTCAGTCAACCATTACTCCACAGACCACCACCACACTCTCTTGT-G--GCAA 116
Query 121 CAGCAACACCGCCACACCACCGACACATCGGAGACAACCACCACCGCCACATGGCTCCAC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 CAGCAACACCGCCACACCACCGACACAACGGAGACAACCACCACCGCCACATGGCTCCAC 176
Query 181 GACGACCTAAAAGAGTCACTCTTCGAGAAGTCTCTCACACCAAGCGACGTCGGGAAACTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 GACGACCTAAAAGAGTCACTCTTCGAGAAGTCTCTCACACCAAGCGACGTCGGCAAACTC 236
Query 241 AACCGCCTCGTCATACCAAAACAACACGCAGAGAAATACTTCCCTCTCAATGCCGTCCTA 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 237 AACCGCCTCGTCATACCAAAACAGCACGCAGAGAAATACTTCCCTCTCAATGCCGTCGTA 296
Query 301 GTCTCCTCTGCTGCTGCTGACACGTCATCTTCGGAGAAAGGGATGCTTCTAAGCTTTGAA 360
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 297 GTCTCCTCTGCTGCTACTGACACGTCATCGTCGGAGAAAGGGATGCTTCTAAGCTTTGAA 356
Query 361 GACGAGTCAGGCAAGTCATGGAGGTTCAGATACTCTTACTGGAACAGCAGTCAAAGCTAT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 GACGAGTCAGGCAAGTCATGGAGGTTCAGATACTCTTATTGGAACAGCAGTCAAAGCTAT 416
Query 421 GTCTTGACTAAAGGATGGAGCAGATTTGTCAAAGACAAACAGCTCGATCCAGGCGACGTT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTCTTGACCAAAGGATGGAGCAGATTTGTCAAAGACAAACAGCTCGATCCAGGCGACGTT 476
Query 481 GTTTTCTTCCAACGACACCGTTCTGATTCTAGGAGACTCTTCATTGGCTGGCGCAGACGT 540
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 477 GTTTTCTTCCAACGACACCGTTCTGATTCCCGGAGACTCTTCATTGGGTGGCGCAGACGT 536
Query 541 GGACAAGGCTCCTCATCCTCCGTCGCGGCCACTAACTCCGCCGTGAATACGAGTTCTATG 600
|| ||||||| | | ||||| | ||| |||||||||||||||||||||| ||||||||||
Sbjct 537 GGCCAAGGCT-C-C-TCCTCTGCCGCAGCCACTAACTCCGCCGTGAATATGAGTTCTATG 593
Query 601 GGAGCTCTTTCTTATCATCAAATCCACGCCACTAGTAATTACTCTAATCCTCCCTCTCAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGAGCTCTTTCTTATCATCAAATCCACGCCACTAGTAATTACTCTAATCCTCCCTCTCAC 653
Query 661 TCAGAGTATTCCCACTATGGAGCCGCCGTAGCAACAGCGGCTGAGACTCACAGCACACCG 720
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 654 TCAGAGTATTCCCACTACGGAGCCGCCGTAGCAACAGCGGCTGAGACTCACTCCACACCA 713
Query 721 TCGTCTTCCGTCGTCGGGAGCTCAAGGACGGTGAGGCTTTTCGGTGTGAATCTGGAGTGT 780
||||| ||||||||||| ||||||||||| |||||||||||||||||| || ||||||||
Sbjct 714 TCGTCATCCGTCGTCGGAAGCTCAAGGACAGTGAGGCTTTTCGGTGTGGATTTGGAGTGT 773
Query 781 CAAATGGATGAAAACGACGGAGATGATTCTGTT---GCAGTTGCCACCACCGTTGAATCT 837
|||||||||||||| |||||||||||||||||| || | ||||||||||||||| |||
Sbjct 774 CAAATGGATGAAAATGACGGAGATGATTCTGTTACCGCCGCTGCCACCACCGTTGA-TCT 832
Query 838 CCCGACGGTTACTACGGCCAAAACATGTACTATTATTACTCTCATCCTCATAACATGGTA 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 CCCGATGGTTACTACGGCCAAAACATGTACTATTATTACTCTCATCCTCATAATATGGTA 892
Query 898 A 898
|
Sbjct 893 A 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5