BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06260.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 2185 0.0
Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 219 7e-56
> Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1
Length=1412
Score = 2185 bits (1183), Expect = 0.0
Identities = 1349/1427 (95%), Gaps = 20/1427 (1%)
Strand=Plus/Plus
Query 267 ATGGGAAATTCGAA-T--TCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCT 323
|||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 60
Query 324 TTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTCCCTCGCTTCCAATTCT 383
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 TTTACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCC 120
Query 384 CAGAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGT 443
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGT 180
Query 444 TCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACGCAGGAAAGATGATAAAATGACT 503
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 181 TCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACACAGGAAAGATGATAAATTGACT 240
Query 504 TATGAAGATCTTGTTATTGCTAAGGCAACATACGAGAAAGGAACTGACGATGAGATTGCT 563
| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 241 TTTGAAGATCTTGTTATTGCTAAGGCAACCTACGAGAAAGGAACTGATGATGAGATTGCT 300
Query 564 GAGTTTATTTACCAGACTTTGGATGTTAATGGCAATGGGGTCTTGTCAAGGTCTGATTTA 623
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 301 GAGTTTATTTACCAGACTTTGGATGTAAATGGCAATGGGGTCTTGACAAGGCCTGATTTA 360
Query 624 GAGTCGTTCCTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAA 683
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 361 GAGTCGGTACTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAAAGTTCTGATGCAGAA 420
Query 684 TCAAGTGATTAC-AAGAAGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATC 742
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 TCAAGTGATTACAAAG-AGATGGTGGATGCGCTACTCAATGCCGCCACTTTCTCAAAATC 479
Query 743 TGATGATGGTTCTGAAAAAGGAATGTCTTTTGAAGACTTCAGAAGCTGGTGCTCATTCGT 802
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 480 TGATGATGGTTCTGAAAAAGGAATGTCTTTTGAGGATTTCAGAAGCTGGTGCTCACTCGT 539
Query 803 TCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGG 599
Query 863 ATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAA 922
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATATCAAGTCCCGCATCTGCTTTATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAA 659
Query 923 GAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCTTGTAGAGTGGAA 982
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCTTGTAGAGTGGAA 719
Query 983 GCTGTTGTATCACAGTTCCGTACACGGTCAAAGCTTCAACACATTCCTCGGACACACATC 1042
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 720 GCTGCTGTATCACAGTTCCTTACACGGTCAAAGCTTCAACACATTCCTAGGACACACATC 779
Query 1043 AAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAAGGATATGTGTATGG 1102
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 780 AAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAGGGATGTGTGTACGG 839
Query 1103 AGGGTACGCCTCTCAACCTTGGGAGAGGTACAGCGATTTCTATGGAGACATGAAGTCTTT 1162
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 AGGATACGCCTCTCAACCTTGGGAGAGGTATAGCGATTTCTATGGAGACATGAAGTCTTT 899
Query 1163 TCTTTTCCAGCTTAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAACAT 1222
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TCTTTTCCAGCTAAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAATAT 959
Query 1223 TCAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCGAATGGGATAGGATTTGGAGG 1282
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 ACAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCAAATGGGATAGGATTTGGAGG 1019
Query 1283 TAAGATAAATCACTTTGGCCTGTTTATATCAGCAAGCTTCGATCAAGGCCAGACATTCGA 1342
||| || ||||||||||| || |||||||||||||||||||| |||||||||||||| ||
Sbjct 1020 TAAAATCAATCACTTTGGTCTCTTTATATCAGCAAGCTTCGACCAAGGCCAGACATTTGA 1079
Query 1343 ATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGAT 1402
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 ATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATACAGCCAGAAGTGAT 1139
Query 1403 AGAATGCTGGGGAATCGTTCAGGCCTCAAATGAACAAGACACCAAACATAACGCCATGAA 1462
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 1140 AGAATGCTGGGGAATCGTTCAGGCCTCAAACGAACAAGACACCAAACACAATGCTATGAA 1199
Query 1463 AGGTACTGTTCTGGAGAGGTTTAAGGAAGATCGCAACATGCTCAAACTAGTCGGCATGGC 1522
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 AGGTACTGTTCTAGAGAGATTTAAGGAAGATCGAAACATGCTCAAACTAGTCGGCATGGC 1259
Query 1523 AGGCAATTCAAATGATTGAATAGAGAATTTAGGTTCTGAGATTCAATCTTAGATATACAC 1582
||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||
Sbjct 1260 AGGCAATTCAAATGATTGA-TAGAGGATTTTGGTTCTGAGATTTAATCTTAGATATACAC 1318
Query 1583 TCAACGTTCGTATACATTGT-GAGAGTGAGTGTGCAAAAACATTATGTACAATAAAGAGT 1641
| |||||| ||||||||| | ||| ||||||||||||| |||||||||||| || |
Sbjct 1319 TAAACGTTTGTATACATT-TCGAGTGTGAGTGTGCAAATACATTATGTACATTA-----T 1372
Query 1642 GTTGTATGATTCATACCATTTCCATTTCACTTGAATCACATCAAAAT 1688
| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 1373 G----A--AT-CATACCAGTTCCATTTCACTTGAATCACATCAAAAT 1412
> Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576
Length=1314
Score = 219 bits (118), Expect = 7e-56
Identities = 143/155 (92%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 852 GTGAGACCTGGATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGG 911
|||||||||| |||||||||||| |||||||| ||||||||||||||| | |||||||||
Sbjct 409 GTGAGACCTGAATATCAAGTCCCACATCTGCTTTATGAAGATAGTGTGGGCTCAGATAGG 468
Query 912 CTACTATT-AAAGAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCT 970
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 469 CTACTATTAAAAGAAGGAATACGCTTGGCATATTGGAGGGGCTCTTCCTCACCACGAGCT 528
Query 971 TGTAGAGTGGAAGCTGTTGTATCACAGTTCCGTAC 1005
|| ||||||||||||| |||||||| ||||| |||
Sbjct 529 TGAAGAGTGGAAGCTGCTGTATCACTGTTCCTTAC 563
Score = 178 bits (96), Expect = 1e-43
Identities = 106/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 640 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATCAAGTGATTACAAGA 699
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 TGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCTGAATCAAGTGATTACAAGG 358
Query 700 AGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATCTGATGATG 750
|||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 359 AGATGGTGGATGTGCTACTCAATGCCACTACTTCCTCAAAATCTGATGATG 409
Score = 176 bits (95), Expect = 5e-43
Identities = 114/123 (93%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 267 ATGGGAAATTCGAATTCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCTTTT 326
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 ATGGAAAATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTT 60
Query 327 ACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTC-CCTCGCTTCCAATTCTCA 385
||||||||||||||||||||||||||||| |||||| ||| ||||| |||||| |||||
Sbjct 61 ACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTC-TCTTACCTCGATTCCAAGTCTCA 119
Query 386 GAG 388
|||
Sbjct 120 GAG 122
Score = 161 bits (87), Expect = 1e-38
Identities = 99/105 (94%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1367 CCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGC 1426
|||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 558 CCTTACCAAAACGAGCATAATACAGCCAGAAGTGATAGAATGCTGGGGAATCGTTCAGGC 617
Query 1427 CTCAAATGAACAAGACACCAAACATAACGCCATGAAAGGTACTGT 1471
|||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 618 CTCAAACGAACAAGACACCAAACATAACACCATGAAAGGTACTGT 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5