BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06265.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325246 jgi|Araly1|325246|fgenesh1_pm.C_scaffold_6000466           468    3e-131


> Ahg325246 jgi|Araly1|325246|fgenesh1_pm.C_scaffold_6000466
Length=318

 Score =  468 bits (253),  Expect = 3e-131
 Identities = 301/323 (93%), Gaps = 7/323 (2%)
 Strand=Plus/Plus

Query  125  ATGACGAGATCGTGGGTGCTTTTGTTTGTTCTTATGTTCATTGTGTTGACTTCTCAGTTT  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACGAGATCGTGGGTGCTTTTGTTTGTTCTTATGTTCATTGTGTTGACTTCTCAGTTT  60

Query  185  GAGTGGAATGAACAAGTTGAGAATGAAAG-TGAGACTAGTAGTCGTCCTCTGATTCTTTC  243
            |||||||||||||||||||||| |||| | |||||| |  |||||||||||| |||||||
Sbjct  61   GAGTGGAATGAACAAGTTGAGAGTGAA-GCTGAGAC-A--AGTCGTCCTCTGGTTCTTTC  116

Query  244  AGATAAAGAGCAACAACATATCCCTCAAGGCAAAGAATCTGTACAAGTAAAGAAAATTCT  303
            ||||||||| ||||  ||||| || ||||||||||| ||||| |||| ||||||||||||
Sbjct  117  AGATAAAGACCAACCTCATATACCACAAGGCAAAGATTCTGTGCAAGAAAAGAAAATTCT  176

Query  304  ATTTCAAGAAAAGAAAATTCAGAAG-TTAAACGAGCTGGTCCGAGATCTAAGGAGGCAGT  362
            || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct  177  ATCTCAAGAAAAGAAAATTCAGAAGCTTAA-CGAGCTGGTCCGAGATCTAAGGAGGCAGT  235

Query  363  TGCTACAATGCAGAAATGAAAATCAGGTTGAGTTAACGGAGCTAGAAACCGAGCTTGATC  422
            |||| |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||
Sbjct  236  TGCTGCAATGCAGAAATGAAAATCAGGTTGAGTTGTCGGAGCTAGAAACTGAGCTTGATC  295

Query  423  AGCTGCTGGTAACAGGTGTTTAG  445
            |||||||||||||||||||||||
Sbjct  296  AGCTGCTGGTAACAGGTGTTTAG  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5