BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06270.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487435 jgi|Araly1|487435|fgenesh2_kg.6__569__AT5G06270.1 1205 0.0
Ahg478506 jgi|Araly1|478506|fgenesh2_kg.3__1207__AT3G11600.1 159 3e-38
> Ahg487435 jgi|Araly1|487435|fgenesh2_kg.6__569__AT5G06270.1
Length=965
Score = 1205 bits (652), Expect = 0.0
Identities = 775/831 (93%), Gaps = 22/831 (3%)
Strand=Plus/Plus
Query 188 AGA-AGAAGACTCTTCTTTGTGATACAAGTAACCAGTCTTTGAGATCACAGAAAACCTCC 246
||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 148 AGAGAGAAGACTCTTCTTTGTGATCCAAGTAACCAGTCTTTGAGATCACAGGAACCCTCC 207
Query 247 TTCTCAAACCGTAGGTTTCAAGATGAGTCGAAGAAGTCCAAAGCTGGAACTGAAGTTGAA 306
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 TTCTCAATCCGCAAGTTTCAAGATGAGTCGAAGAAGTCCAAAGCTGGAACTGAAGTTGAA 267
Query 307 TCTCTCGCCGCCTACGTCAAGCCAGAGGAGGATGGTTCGATCTCCAAGCCGCTCAGCGAC 366
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 268 TCTTTCGCCGCCTACGTCAAGCCAAAGGAGGATGGTTCGATCTCCAAGCCGCTCTGCGAC 327
Query 367 GACTTCACCGACCTCACCTCCAAGCTCATGCGTCTCGTCGGAGATGAACCAGGACGAGCC 426
|||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 328 GACTTCACCGACATCACCGCCAAGCTCGTGCGTCTCTTCGGAGATGAACCAGGACGAGCC 387
Query 427 ATCTGTGAGATACTCGACAAGTCCAGAGACTACCTCGATGGTTCTTGTCGGATGTCCTCG 486
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 388 ATCTGTGAGATACTCGACAAGTCCAGAAACAACCTCGATGGTTCTTGTCGGATGTCCTCG 447
Query 487 TTGTCTCATGTACGTTATGCTCTCAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCAC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TTGTCTCATGTACGTTATGCTCTCAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCAC 507
Query 547 CGTTCTTCTTGATTTCCTCCATGAAAACGCCACAAACGCCAACGCAAACGCAGCCGCTGC 606
||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||
Sbjct 508 CGTTCTTCTTGATTTCCTCCATGAAAACGCCTCAAACGC-AA---A--CGCAGCCGCTGC 561
Query 607 TTCCTCTGGTCGCAAGACTCGAAGGAACTGAT-GAAGGACCAGTAAAATCAAAATCCTGT 665
|||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 562 TTCCTCAGGTCGCAAGACTCGAAGGAACTGATTGA-GGACCAGTAAAATCAAAATCCTGT 620
Query 666 TCCTTCTTTATGTTATTTAtttttc--t-ttcgtttttt-tGCGAATGTAGCTGTTGTTT 721
| || ||||| ||||||||||||| | || ||||||| ||||||||||||||||||||
Sbjct 621 -CTTT-TTTATTTTATTTATTTTTCACTCTTTGTTTTTTCTGCGAATGTAGCTGTTGTTT 678
Query 722 TTATGAGAGTAGTGCTAATCACGCTCCACTCTAAAACCCGGAGAAGA-A-GGTAGGAGAA 779
| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 679 T-ATGAGAGTAGTGCTAATCACGCTCCACTCTAAAACCCGAAGAAGAGAAGGTAGGAGAT 737
Query 780 GGAAATTAGGGTTTCCCTATTCAAGAAAATTTTCAAAAAGAGTGGAGCGCGAATAGCACT 839
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 738 G-AAATTAGGGTTTCCCTATTCAAGAAAATTT-CAAAAAGAGTGGAGCGCGAATAGCACT 795
Query 840 AACttttctttttcttttctctcaacatttttctaccatttgagttctctaatggaagaa 899
||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 796 AACTTTTCTCTTTATTTTCTCTTAGCATTTTTCTACCATTTGAGTTCTCTAATGGAAGAA 855
Query 900 gaatttttAAATATATGTGAAAACATGTGTCATTGTCTTCGTAT-TCCTCTACTCTATCT 958
||||||||| |||||||||||||||||||||||||||||| || | ||||||| |||
Sbjct 856 GAATTTTTATATATATGTGAAAACATGTGTCATTGTCTTC-TACGTATTCTACTCCATCG 914
Query 959 AATTTCTCATACTCTGTTTCGGATGCTCTGTTTCTAGGGCATCTCTGTTTT 1009
||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 915 AATTTCTGATACTCTGTTTCGGATGCTCTGTTTCTAGGGCATCTCCGTTTT 965
Score = 279 bits (151), Expect = 2e-74
Identities = 161/166 (97%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 13 tctctctctctcACACAGTCCTTTCTCACTCATAATTAAATTAAGCCTTAATGAAAAATC 72
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTCTCTCTCACAGTCCTTTCTCACTCATAATTAAATTAAGCCTTAATGAAAAATC 60
Query 73 TATCTATCTCCTCCTTTAATTTTCTCTCTGTGTTCTTTCTTGTATATAAAGGCCTAAGCT 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCTATCTCCTCCTTTAATTTTCTCTCTGTGTTCTTTCTTGTATATAAAGGCCTAAGCT 120
Query 133 CAAGCAATCCAACCACCAGTGGTAATAAGAGAGAAGACTCTTCttt 178
||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 121 GAAGCAATCCAACCACGAGTAGTAATAAGAGAGAAGACTCTTCTTT 166
> Ahg478506 jgi|Araly1|478506|fgenesh2_kg.3__1207__AT3G11600.1
Length=721
Score = 159 bits (86), Expect = 3e-38
Identities = 108/119 (91%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 458 ACCTCGATGGTTCTTGTCGGATGTCCTCGTTGTCTCATGTACGTTATGCTCTCAGAAGAC 517
||||| |||||||||||||| || |||||||| || |||||||||||||| || || ||
Sbjct 272 ACCTCAATGGTTCTTGTCGGTTGCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGAT 331
Query 518 GACCCTAAATGCCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCATGAAAACGC 576
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 332 GACCCTAAATGTCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGC 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5