BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06280.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487437 jgi|Araly1|487437|fgenesh2_kg.6__571__AT5G06280.1 1144 0.0
> Ahg487437 jgi|Araly1|487437|fgenesh2_kg.6__571__AT5G06280.1
Length=889
Score = 1144 bits (619), Expect = 0.0
Identities = 834/930 (90%), Gaps = 45/930 (5%)
Strand=Plus/Plus
Query 33 AAGACTATGGAGATTCCGCCGTCACAATCTCCGGCGACTCAACTCCGCCGTACAAAATCC 92
|||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 1 AAGACTATGGAGATTCCGCCGTCACAATCTCCGGCGACGCCGCTCCGTCGTACAAAATCC 60
Query 93 ATATCCAACATGACGACTCTAACTCCTCCAGAAGTTCCTTTCGACATAGCTTCAACGCCG 152
||||||| |||||| ||| | |||||||| ||| ||||||||||||| ||||||||||||
Sbjct 61 ATATCCACCATGACCACTTTGACTCCTCCCGAAATTCCTTTCGACATGGCTTCAACGCCG 120
Query 153 CCGTCTTCGTTCGATTACGAGCTCATCTCCGTAAAACCATCCTCTTTCGTAGCTTACACT 212
||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 CCGTCTTCGTTCGATTATGAGCTCATCTCCATTAAACCATCCTCTTTCGTAGCTTACACT 180
Query 213 TCTCTCAGAGATATCATCTCTTCTCCGATTAACTCTTCACTCAATTTACCGTCGATCAAC 272
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 181 TCTCTCAGAGATATCATCTCTTCTCCGAGTAACTCTTCACTCAATTTACCGACGATCAAC 240
Query 273 GGTAGCTGCTCTCCTGTTATATCCACCGCCGCCGGAGATATCTCGATTCGTAACCGTCTC 332
||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 241 GGTAGCTTCTCTCCGGTTATATCCACCGCCG--G-AGATATCTCGATTCGTAACCGTCTC 297
Query 333 GTTAAGCAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCAGATGATTCT 392
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 298 GTTAAGAAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCGGAGGATTCT 357
Query 393 GCTGGTTCTCAATTCTTCCGCCGCGTTTGGCTTCACTTATCCGCCGGGTTTCAGTTCTTG 452
||||||||||||||||||||||| || ||| |||| ||||||||||| ||| |||||||
Sbjct 358 GCTGGTTCTCAATTCTTCCGCCGTGTATGGATTCATTTATCCGCCGGAATTCGGTTCTTG 417
Query 453 CGACGTGTGTTTGATTGGATTTTTCAATCGTTTCGTGTTCCTTTGATTGTCAAATAAACT 512
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 418 AGACGTGTATTTGATTGGATTTTTCAATCGATTCGTGTTCCTTTGATTGTCAAATAGA-T 476
Query 513 TTGATT-TG-ACA-AAGGAAGTGAT-GGATTTGGTGAGAGTGCTCTGATGCAGTAAAGCT 568
| ||| || | | || ||||||| ||||||||||||||| | ||| | | | |
Sbjct 477 T--ATTCTGCAGATAAAGAAGTGAAAGGATTTGGTGAGAGT--T-TGA-G-A--A----T 523
Query 569 TGAGGATGTATATGTTTGTTTTGAATACCTTATAGATGGTGAATTGTTGTTGCAATTGCT 628
| | ||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 524 -G----T--ATATGTTTGTTTT-AA-ACCTTATCGATGGTGAATTGTTGTTGCAATTGCT 574
Query 629 TGAAGATTTGGAGGCTCCAGTGGAAGATACATTGCAGTAGTTGAGCAATTACTAAATGTC 688
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 575 TGAAGATTTGGAGGCTCCAGTGGAAGCCACATTGCAGTAGTTGAGCAATTACTAAATGTC 634
Query 689 CTCTTATCTTTAAGACAGAGATTCCTTGATCGATGTCAGATTCATGTTTTGACATGTATG 748
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 635 CTCTTATCTTTAAGACGGAGATTCCTTGATCGATGTCCGATTCATGCTTTGACATGTATG 694
Query 749 GACATAGTAGCTTCTCGTAGACATAGCTAAGTCCCTGTTAGAAACCAAGAGAAGAAGATT 808
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 695 GACATAGTAGCTTCTCATAGACATAGCTAAGTCCCTGTCAGAAACCAAGAGAAGAAGATT 754
Query 809 GGTCGTTTTGTGAATCTAAGAATGAGAATGAATTCTCATTAGATTTTTATTGCATTGTAC 868
||| ||| ||||||| |||||||| | || ||||| |||||||| ||||||||||
Sbjct 755 GGT--TTT-GTGAATCAAAGAATGA-A-TG----CTCATGAGATTTTTCTTGCATTGTA- 804
Query 869 TGTAGTTAGTACCTGTGATTTCGGGTAACATAAGTAGATGAGAAGAGCGATTTTGATCTC 928
||| | | ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 805 -GTA-T--G-ACCTGTGATTTCGGGTACCATAAGTAGACGAGAAGAGCGATTTTGATCTC 859
Query 929 TCCGTAGAGTGGTAACCTGCGGATAGATGA 958
||||||||||||||||| ||| |||||||
Sbjct 860 ACCGTAGAGTGGTAACCTACGGTTAGATGA 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5