BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06290.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940065 jgi|Araly1|940065|scaffold_600609.1 1153 0.0
Ahg928878 jgi|Araly1|928878|scaffold_301335.1 704 0.0
> Ahg940065 jgi|Araly1|940065|scaffold_600609.1
Length=840
Score = 1153 bits (624), Expect = 0.0
Identities = 786/859 (92%), Gaps = 32/859 (4%)
Strand=Plus/Plus
Query 159 ACAGAGTCAATGTCAATGGCGTCTATAGcttcttcttcttccaccaccc-tactctcttc 217
||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 9 ACAGAGT-TATGTCAATGGCGTCTATAGCTTCTTCTTCCACCACCACCCTTA-TCTCTTC 66
Query 218 ctctagggttcttcttccctccaagtcttctcttttatctcctaccgtctctttccCCAG 277
|||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||
Sbjct 67 CTCTAGGGTTCTTCTTCCCTCCAAGTCTTCTCTTATATCTCCCGCCGTGTCTTTCCCCAG 126
Query 278 AATCATACCCTCTTCCTCGGCATCATCCTCTTCTCTCTGTTCCGGGTTCTC-CAGTCTCG 336
| | | | | || |||||| || ||| |||||| ||||| | |||||
Sbjct 127 ----A-A--C-C-T--TC-GCATCA------TC-CTC--TTCCGGATTCTCTC-GTCTC- 163
Query 337 GTT-CCCTCACCACCA-ACCGCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGC 394
||| |||| ||| ||| | | ||||||||||||||||| ||||| ||||||||| |||||
Sbjct 164 GTTCCCCTAACCTCCAGA-CTCTCCGCCTCACGCCGGAGCTTCGTCGTCAAGGCACAGGC 222
Query 395 TGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGA 454
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 223 CGATGATTTACCACTGGTCGGTAATAAGGCGCCTGATTTTGAGGCAGAGGCAGTTTTTGA 282
Query 455 TCAAGAGTTCATAAAGGTGAAGCTCTCTGAGTACATTGGCAAAAAGTATGTTATTCTATT 514
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 283 TCAAGAGTTCATCAAGGTGAAGCTCTCTGAGTACATTGGGAAAAAGTATGTCATTCTATT 342
Query 515 CTTCTACCCTTTGGACTTCACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCG 574
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 343 TTTCTACCCTTTGGACTTCACTTTTGTTTGCCCCACAGAGATTACTGCCTTCAGTGACCG 402
Query 575 TTATGAAGAATTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTT 634
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 403 CTATGAAGATTTTGAGAAGCTAAACACCGAAGTATTAGGGGTCTCAGTCGACAGTGTGTT 462
Query 635 CTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCGGGAGGGCTCGGTGATCTGAATTA 694
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 463 CTCGCATCTCGCGTGGGTCCAAACAGACAGAAAGTCAGGAGGGCTCGGTGATCTGAATTA 522
Query 695 TCCTCTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGA 754
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CCCACTTGTTTCGGATATCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGA 582
Query 755 TCAGGGCATTGCACTGAGAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTC 814
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 583 CCAGGGCATTGCACTGAGAGGACTTTTCATCATCGACAAGGAAGGAGTCATTCAGCATTC 642
Query 815 CACCATCAACAACCTCGGTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGC 874
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 643 CACCATCAACAACCTTGGTATTGGTCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGC 702
Query 875 ATTACAGTATGTTCAAGAAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGGGA 934
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 703 ATTACAATATGTTCAGGAAAACCCGGATGAAGTTTGCCCTGCGGGATGGAAGCCCGGGGA 762
Query 935 GAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGAGGCT 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GAAATCAATGAAACCTGACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGAGGCT 822
Query 995 AAGATTGAACACAT-GTTT 1012
|| | |||||| || ||||
Sbjct 823 AAAACTGAACA-ATTGTTT 840
> Ahg928878 jgi|Araly1|928878|scaffold_301335.1
Length=934
Score = 704 bits (381), Expect = 0.0
Identities = 555/640 (87%), Gaps = 8/640 (1%)
Strand=Plus/Plus
Query 355 GCTCCGCCTCACGCCGGAACTTCGCCGTCAAGGCTCAGGCTGATGAT-TTACCACTGGTC 413
||||| | || ||||||| ||| || ||||| || ||||| |||||| || ||||||||
Sbjct 187 GCTCCACTTCTCGCCGGAGCTTTGCTGTCAAAGCCCAGGCCGATGATCTT-CCACTGGTT 245
Query 414 GGTAATAAGGCGCCTGATTTTGAAGCTGAGGCAGTTTTTGATCAAGAGTTCATAAAGGTG 473
|| || |||||||||||||| || || ||||| || |||||||| |||||||| |||||
Sbjct 246 GGAAACAAGGCGCCTGATTTCGAGGCAGAGGCTGTGTTTGATCAGGAGTTCATCAAGGTT 305
Query 474 AAGCTCTCTGAGTACATTGGCAAA-AAGTATGTTATTCTATTCTTCTACCCTTTGGACTT 532
|||||||||||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 306 AAGCTCTCTGAGTACATTGG-AAAGAAGTATGTGATTCTCTTCTTCTACCCATTGGACTT 364
Query 533 CACTTTTGTCTGCCCCACTGAGATTACTGCCTTCAGTGACCGTTATGAAGAATTTGAGAA 592
|||||| |||||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct 365 CACTTTCGTCTGCCCAACAGAGATTACTGCCTTCAGTGACCGGCATTCAGAATTTGAGAA 424
Query 593 GCTAAACACCGAAGTATTAGGGGTCTCTGTCGACAGTGTGTTCTCGCATCTTGCGTGGGT 652
| | ||||||||| ||||||| | |||||||| ||||||||||| || ||||| |||||
Sbjct 425 GTTGAACACCGAAATATTAGGTATTTCTGTCGATAGTGTGTTCTCTCACCTTGCATGGGT 484
Query 653 CCAAACAGACA-GAAAGTCGGGAGGGCTCGGTGATCTGAATTATCCTCTTGTTTCGGATA 711
||||||||||| |||| || |||||||| |||||| |||| ||||| ||| |||| |||
Sbjct 485 CCAAACAGACAGGAAA-TCTGGAGGGCTTGGTGATTTGAACTATCCCCTTATTTCAGATG 543
Query 712 TCACTAAATCCATTTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCACTGA 771
|||||||||| || ||||| || |||||||||||||||| ||||||||| || |||||||
Sbjct 544 TCACTAAATCAATCTCAAAGTCTTTTGGAGTGCTCATCCATGATCAGGGAATAGCACTGA 603
Query 772 GAGGGCTTTTCATCATAGACAAGGAAGGAGTCATTCAGCATTCCACCATCAACAACCTCG 831
||||||| ||||| || |||||||||||||| || || ||||||||||||||||| || |
Sbjct 604 GAGGGCTCTTCATAATTGACAAGGAAGGAGTGATCCAACATTCCACCATCAACAATCTTG 663
Query 832 GTATTGGCCGAAGTGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTATGTTCAAG 891
||||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 664 GTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGGCATTACAGTACATCCAGG 723
Query 892 AAAACCCGGATGAAGTGTGCCCTGCGGGATGGAAGCCAGGG-GAGAAATCAATGAAACCT 950
||||||||||||| || ||||| |||||||||||||| ||| ||||| ||||||||||||
Sbjct 724 AAAACCCGGATGAGGTCTGCCCAGCGGGATGGAAGCC-GGGTGAGAAGTCAATGAAACCT 782
Query 951 GACCCCAAGCTCAGCAAAGAATACTTTTCAGCTATCTAGA 990
||||| || ||||||||||| ||||| |||||||| ||||
Sbjct 783 GACCCGAAACTCAGCAAAGAGTACTTCTCAGCTATTTAGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5