BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06310.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487441 jgi|Araly1|487441|fgenesh2_kg.6__575__AT5G06310.1 2198 0.0
> Ahg487441 jgi|Araly1|487441|fgenesh2_kg.6__575__AT5G06310.1
Length=1521
Score = 2198 bits (1190), Expect = 0.0
Identities = 1404/1505 (93%), Gaps = 23/1505 (2%)
Strand=Plus/Plus
Query 56 CAAAACCCCAACGATC--AGAGACATGGAGGAGGAGAGAAGAGATGACTACAAATTCCTG 113
|||||||||||||||| |||||||||||||| || | || |||||| ||||||||||||
Sbjct 1 CAAAACCCCAACGATCAGAGAGACATGGAGGA-GACA-AA-AGATGATTACAAATTCCTG 57
Query 114 AGAATTCAAGACGCTTTCAAAGCATTGCATCTTCATGTTAACCTCATTGGAGTCATCGTT 173
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGAATTCAAGACGCTTTCAAGGCATTGCATCTTCATGTTAACCTCATTGGAGTCATCGTC 117
Query 174 GAGCTAGGATTCTCCAATGGCTCTGATTGTTCATGTACGCTCAAAATCGTTGATCCATGG 233
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 118 GAGCTAGGATTCTCCAATGGCTCTGATTGTTCCCGTACGCTTAAAATCGTTGATCCATGG 177
Query 234 TATTCGGGATCTGGCCTTCCCGTTAAGTTCGTCGCTCGTACCATTCGAGAC-CTTCCTCG 292
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 178 CATTCGGGATCTGGCCTTCCCGTTAAGTTCGTCGCTCGTACCATTCGAG-CGCTTCCTCG 236
Query 293 TGTTGAATCGATCGGAGATATCATCTTACTTTCACGTGTAAAGATTGTGCTGATTAACCG 352
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 237 TGTTGAATCGGTCGGAGATATCATCTTTCTTTCACGTGTAAAGATTGTGCTGATTAATCG 296
Query 353 GAAAATCACAGCTCTCTGCAATGAAACAACCTCTTCGTCTTTTGCTTTATTCAATGGGAA 412
||||||||||||||| |||||||||||| | ||||||||||||||| | |||||||||||
Sbjct 297 GAAAATCACAGCTCTTTGCAATGAAACATCTTCTTCGTCTTTTGCTCTGTTCAATGGGAA 356
Query 413 ACATAGCGTGGATTCTATACCTTACC-AGTCCTCACCTAAATTCCTGATGAGAGAACAGG 471
|||| ||||||||| ||||||||||| || | ||||||||||| |||||||||||||| |
Sbjct 357 ACATGGCGTGGATTTTATACCTTACCAAG-CATCACCTAAATTTCTGATGAGAGAACATG 415
Query 472 ATAAGAACTTCTTATCGAATCTGAGAGAATGGATGATCACGTACAAGTTTGAAGATGGGT 531
|||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||
Sbjct 416 ATAAGAACTTCTTATCAAATCTGAGAGAGTGGATGATAACTTACAAGTTTGAAGATGGGT 475
Query 532 CATGCTGTTTCACATCCCTGAAAGATATCAAAGAAGGCGAATGTTCAAACCTATCTTGCC 591
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 CATGCTGTTTCACATCCCTGAAAGATATCAAAGAAGGGGAATGTTCAAACCTATCTTGCC 535
Query 592 AGATTGTTCACATTTCCAAGGTCTATAAAGATAGATGGTACCTCTTTGTTTGGGATGGAA 651
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 536 TGATTGTTCACATTTCCAAGGTCTATAAAGATAGGTGGTACATCTTTGTTTGGGATGGAA 595
Query 652 CTGAGATGCCACCCTGCAACATCTTGGTTAAGTCAGAAAGGCTTCCTTTATGTGTAGAAC 711
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 596 CTGAGATGCCACCATGCAACATCTTGGTAAAGTCAGAAAGGCTTCCTTTATGTGTCGAAC 655
Query 712 CCGAGATGTTGCCTACATACATGTTACGTAAGTTTCCTACTTTTGGTTCCGTTTTGAGGA 771
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 656 CTGAGATGTTGCCTACATACATGTTACGTAAGTTTCCTACTTTTGGTTCCGTCTTGAGGA 715
Query 772 TCATAGTAGATAGAGTTAGTGAGAAGCAGGCCATTCACTGTCTTCAACCTGGTCAACACG 831
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 716 TCCTAGTAGATAGAGTTAGTGAGAGGCAGGCCATTCACTGTCTTCAACCTGGTCAACACG 775
Query 832 TGAAGCTTCTGAACCTTTTCTTTCAAGTAAATATGGGATTATGGAACGCCACTTTTACTC 891
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 TGAAGCTTCTGAACCTTTTCTTTCAAGTAAACATGGGATTATGGAACGCCACTTTTACTC 835
Query 892 CCTCTACAAAGATGCAGTACACAATGAGCAGAGAGATGGAAGCCTTTAGTCCTCAAAGAA 951
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 836 CCTCTACAAAGATGCAGTACACAATGAGCAGAGAGTTGCAAGCTTTTAGTCCTCAAAGAA 895
Query 952 TGTGTGGGGAGAAGTTTTCACCGAGATGGAACCCAATCGCGCGTTGCATTAGTCGTTCAC 1011
||| |||||||||||| ||| ||||||||||||| || || ||||||||||||| |||||
Sbjct 896 TGTATGGGGAGAAGTTGTCATCGAGATGGAACCCCATTGCACGTTGCATTAGTCCTTCAC 955
Query 1012 ATTCTGAAATCACAGGGGTTGCCCATGACGATGCTCCATTTGTTTCTCTGATGGACATCC 1071
|||| | ||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 956 ATTCAGGAATCACAGGGGTTGCCCATGAGGACGCTCCGTTTGTTTCTCTGATGGACATTC 1015
Query 1072 TGACCTATCACAATGTGACTGCTAAATTCAGGTGTGTTGTTCGGTTCATACAAGTGTATC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGACCTATCACAATGTGACTGCTAAATTCAGGTGTGTTGTTCGGTTCATACAAGTGTATC 1075
Query 1132 CCCGAGACGTCAGAAAACTCCGTGATATCA-ACGGAAATATCAAATTGGTAGCTATACTA 1190
||||||| |||||||||||||| ||| || |||||||||||||| || |||||||||||
Sbjct 1076 CCCGAGATGTCAGAAAACTCCGCGAT-TCCCACGGAAATATCAAACTGCTAGCTATACTA 1134
Query 1191 GAAGATGCAACCGCCAGAATCCATGCTTCTCTATATGCTGATGAAGGGGAAAAGTTTTTC 1250
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1135 GAAGATGCAACCGCCAGAATCCACGCTTCTCTATATGCTGCTGAAGGGGAAAAGTTTTTC 1194
Query 1251 GGGTGTGA---CGAATCTGATGAAGAGGCTCTAGTCAAGAAGCTGAATAGATTGTTGGGA 1307
|||||||| |||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1195 GGGTGTGAAGACGAATCTGATGAAGAGGCCCTGGTCAAGAAGCTGAATAGATTGTTAGGA 1254
Query 1308 GGTGAAGAGATGGAGAAAGTGCCAAGAAATCCTCCATGGGTACAATGTTGCTTGTTCTCA 1367
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1255 GGTGAGGAGATGGAGCAAGTGCCAAGAAATCCTCCATGGGTACAATGTTGCCTGTTCTCA 1314
Query 1368 TTCTACAAACACAAAATGGATCAGTGGGAAAGCAGAAGATTCCGCATTTTTGATACTTGG 1427
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||
Sbjct 1315 TTCTACAAACACAAAATGGATCAATGGGGAAGCAGAAGATTCCGGATTTTTGATACATGG 1374
Query 1428 ATCAATGCTTCATGAGACAATCA---TAATGCTAATTGTATAGTTATTAGCA-T--TAAA 1481
|||||||||||||||||||| | |||||||||||| ||||||||| | | | ||||
Sbjct 1375 ATCAATGCTTCATGAGACAAAAAAAATAATGCTAATTGAATAGTTATTGGTAATGATAAA 1434
Query 1482 CAAAATGTGATTATTTATTTACATGGAACCATACAATAAAACATTACATAAGAAAAATAT 1541
||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1435 CAA---GTGATTATTTATTTACATAGAACCACACAATAAAATATTACATAAGAAAAATAT 1491
Query 1542 CTCTC 1546
|||||
Sbjct 1492 CTCTC 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5