BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06340.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487443 jgi|Araly1|487443|fgenesh2_kg.6__577__AT5G06340.1 1439 0.0
> Ahg487443 jgi|Araly1|487443|fgenesh2_kg.6__577__AT5G06340.1
Length=935
Score = 1439 bits (779), Expect = 0.0
Identities = 888/939 (95%), Gaps = 14/939 (1%)
Strand=Plus/Plus
Query 9 TTTTATCACTAGTGAGAAAATTGAAACCAATCACCGATTGTTCTGAGCCGGACGAAGGAG 68
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 TTTTATCACTTGTGAGAAAATGGAAACCAATCACCGATTGTTGTGAGCCGGACGAAGGAG 60
Query 69 AGGCAGCCGCCTAAGAAGTTGCCGTCGTGCGCCATGGCCGTGAAGGCTTCTGGATTCATT 128
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGGAAGCCGCCTAAGAAGTTGCCGTCGT----CATGGCCGTGAAGGCTTCTGGATTCATC 116
Query 129 GGGAAATCAGCAATCTCTGTTCATCTAGATTTCTCTTCGTTTCCTGTGAAATTTTCATGC 188
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 117 GGGAAATCAGCAATCTCAGTTCATCTAGATTTCTCTTCGTTTCCTGTGAAATTCTCATGC 176
Query 189 TTGAAACAGTTTTCTGTATCTTCACCAAAGCCACTGGTCGTTTTATCCGTTGCCTTATCG 248
|| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 177 TTTAAACAGTTTTCTGTATCTACTCCAAAGCCACTGGTCGTTTTATCCGTGGCCTTATCG 236
Query 249 TCGCCGGCAAGAACAGTTGAGTCTCCGCCTGTTGGTTACCGGAAGAATGTTGGGATTTGT 308
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 237 CCGCCGGCAAGAACAGTTGAGTCTCCGCCGGTTGGTTACCGGAAAAATGTTGGGATTTGT 296
Query 309 CTCGTTAGCCCATGTAGAAAGATTTTTACGGCGTCAAAGATTCACATTCCGGATACATGG 368
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 297 CTCGTTGGCCCATGTAGAAAGATTTTTACGGCATCAAAGATTCACATTCCGGATACATGG 356
Query 369 CAGATGCCTCAGGGTGGTGCTGATGAGGGAGAAGATTTGAGGAACGCTGCCTTTAGAGAA 428
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 CAGATGCCTCAGGGTGGAGCTGATGAGGGAGAAGATTTGAGAAACGCTGCCTTTAGAGAA 416
Query 429 CTGAGAGAAGAAACAGGGGTTACTTCGGCAGAATTCATTGCGGAGATACCAAACTGGCTG 488
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 417 CTGAGAGAAGAAACAGGGGTTACCTCGGCGGAATTCATTGCGGAGATACCAAACTGGCTG 476
Query 489 ACCTATGATTTTCCCCGAGAAGTAAAGGACAAACTAAACCGGAAATGGCGAACAAGTTAC 548
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 ACCTATGATTTTCCCCGAGAAGTGAAGGACAAACTAAACCGGAAATGGCGAACAAGTTAC 536
Query 549 AAAGGCCAAGCTCAGAAGTGGTTTCTCTTTAAGTTCACGGGCAAGGAAGAAGAGATAAAT 608
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 537 AAAGGCCAAGCTCAGAAGTGGTTTCTCTTCAAGTTCACGGGCAAGGAGGAAGAGATAAAT 596
Query 609 CTCCTTGGAGACGGTACTGCAAAACCAGAGTTTAAGGTGTGGTCGTGGATGCTACCGGAA 668
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTCCTGGGAGACGGTACTGCAAAACCAGAGTTTAAGGTGTGGTCGTGGATGCTACCGGAA 656
Query 669 CAAGTTATTGAACATGCTGTATATTTCAAGAGACCTGTTTATGAGCATGTCATAAAGCAA 728
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 657 CAAGTGATTGAACATGCTGTGTATTTCAAGAGACCTGTCTATGAGCATGTCATAAAGCAA 716
Query 729 TTCAACCCTTATTTTGTGGATGAAGAAAAGGATTCCATGAACTCGTCTAAGGATTGAATG 788
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 717 TTCAACCCTTATTTTGTGGATGAAGAAAACGATTCCATGAACTTGTCCAAGGATTGAATG 776
Query 789 TGCACAAAGATTCACCAAGTGAATACTGATTAGAAGCAAATCAATCAATTCATTATACTG 848
|||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 777 TGCACAAAGATTCATCAAGTGAATACTGATTAGGAG-AAATCAATCAATTCATTATACAG 835
Query 849 GTTTCTCTTGAATCTCATCAAAAATAAAAATTCATGAATCTC---A-G---A--CATTGA 899
|||||||||||| ||||||||| |||||||| |||||||||| | | | ||||||
Sbjct 836 GTTTCTCTTGAACCTCATCAAAGATAAAAATGCATGAATCTCTTCATGTTCAGACATTGA 895
Query 900 TCTTGTAGTTTGATGCTATATATAAATCCTCACGAATTA 938
|||||||||||||| ||||||||||||||||||||||||
Sbjct 896 TCTTGTAGTTTGATACTATATATAAATCCTCACGAATTA 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5