BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06360.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940076 jgi|Araly1|940076|scaffold_600620.1 1363 0.0
> Ahg940076 jgi|Araly1|940076|scaffold_600620.1
Length=824
Score = 1363 bits (738), Expect = 0.0
Identities = 795/823 (97%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 48 ctGATCGCTTAGAAGCAACCATGCCTCAGGGAGATTACATAGATTTGCACAGGAAGAGGA 107
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CTGATCGCTTAGAAGCAACCATGCCTCAGGGAGATTACATAGATTTGCACATTAAGAGGA 60
Query 108 ATGGATATCGCCTCGACCACTTCGAGAGAAAGCGCAAGAAGGAGGCGCGTGAAGTTCACA 167
|||||||||||||||| ||| |||| | |||||||||||||||||||| ||||||||
Sbjct 61 ATGGATATCGCCTCGATCACCACGAGCGCTTGCGCAAGAAGGAGGCGCGTGCAGTTCACA 120
Query 168 AGCACTCCACCATGGCTCAAAAGTCTCTAGGTATCAAGGGTAAGATGATTGCTAAGAAAA 227
||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGCGCTCCGCCATGGCTCAGAAGTCTCTAGGTATTAAGGGTAAGATGATTGCTAAGAAAA 180
Query 228 ACTATGCTGAGAAAGCTCTCATGAAGAAAACATTGAAAATGCATGAAGAGTCATCATCAA 287
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 181 ACTATGCTGAGAAAGCTCTCATGAAGAAAACATTGAAAATGCACGAGGAGTCATCATCAA 240
Query 288 GGCGTAAGGCTGATGAGAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTCTTGATCGTG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGTAAGGCTGATGAGAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTCTTGATCGTG 300
Query 348 AAGACACCACTCGTGCCAAGGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGACACCACTCGTGCCAAGGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAG 360
Query 408 CTGGCAAATGGGAGGTCCCTCTT-CCAAAGGTCCGTCCAGTTGCTGAAGATGAAATGTTT 466
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 361 CTGGCAAATGGGAAGTCCCT-TTACCAAAGGTCCGTCCAGTTGCTGAAGATGAAATGTTC 419
Query 467 AGAGTGATCCGATCTGGAAAAAGGAAAACTAAACAATGGAAGCGGATGGTTACAAAAGCT 526
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 420 AGAGTGATCCGATCTGGAAAAAGGAAAACAAAACAATGGAAGAGGATGGTTACAAAAGCT 479
Query 527 ACATTTGTTGGACCTGCTTTCACAAGGAAGCCTCCAAAGTACGAGCGTTTCATCCGTCCA 586
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 ACATTTGTTGGACCTGCTTTCACAAGGAAGCCTCCAAAGTACGAGCGTTTCATTCGTCCA 539
Query 587 TCTGGTCTTCGTTTCACCAAGGCCCACGTCACTCACCCTGAACTAAAATGCACTTTCTGT 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTGGTCTGCGTTTCACCAAGGCCCACGTCACTCACCCTGAACTAAAATGCACTTTCTGT 599
Query 647 CTCGAGATCATCGGGATTAAGAAGAATCCTAACGGTCCCATGTATACATCACTCGGTGTG 706
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTGAGATCATCGGAATTAAGAAGAATCCTAACGGTCCCATGTATACATCACTCGGTGTC 659
Query 707 ATGACCAGGGGAACAATCATCGAGGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGACCAGGGGAACAATCATCGAGGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCT 719
Query 767 GGAAAGGTTGTCTGGGGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGT 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAAAGGTTGTCTGGGGAAAATACGCTCAAGTGACAAACAATCCAGAGAACGACGGATGT 779
Query 827 ATAAATGCTGTTTTACTTGTGTAACCAAATGTCCGGCACTGTC 869
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 ATAAATGCTGTCTTACTTGTGTAACCAAATGTCCGGCACTGTC 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5