BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06370.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487446 jgi|Araly1|487446|fgenesh2_kg.6__580__AT5G06370.1 1271 0.0
> Ahg487446 jgi|Araly1|487446|fgenesh2_kg.6__580__AT5G06370.1
Length=958
Score = 1271 bits (688), Expect = 0.0
Identities = 858/936 (92%), Gaps = 27/936 (3%)
Strand=Plus/Plus
Query 72 GAAAACGG-AAGCCATTTCTAGCAAAACAATTC-TCTCTT-TTGTCTTGAAGATAAGTTT 128
|||||||| ||||||||| ||||| || || || | |||| || |||||||||||||||
Sbjct 43 GAAAACGGAAAGCCATTTTTAGCATAATAA-TCAT-TCTTCTT-CCTTGAAGATAAGTTT 99
Query 129 CACAAAAAGGTCTGCTTCGCCTCTTCTACGACGTTGCAGAAACTAAGAAGAGATGGGTCT 188
||| ||||| || |||||| ||||||||||||| | | ||||||||
Sbjct 100 CACGAAAAGCTCGGCTTCGTCTCTTCTACGACG-T--------T--------ATGGGTCT 142
Query 189 TCTCTCCAACAGAATCGATAGATCGAGTTTGAAACCTGGAGATCATATCTACTCCTGGAG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TCTCTCCAACAGAATCGATAGATCGAGTTTGAAACCTGGAGATCATATCTACTCCTGGAG 202
Query 249 GACTGCTTACATCTATGCCCATCACGGCATCTATGTTGGAGATGATAGAGTCATCCATTT 308
||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 203 AACTGCTTACATATATGCCCACCACGGAATCTTTGTTGGAGATGATAGAGTCATCCATTT 262
Query 309 CACTAGACGAGGCCAAGAAGTTGGAACCGGGACTGTTCTAGATCTCATACTAGTCAGCTC 368
||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 263 CACCAGACGAGGCCAAGAAGTTGGAACCGGGACTGTTCTAGATCTTATACTTGTGAGCTC 322
Query 369 AGGTCCATCCCGAAACCACACCCACTGTCCAACCTGTGTTCCACCTAACGAAGGTCACGG 428
||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 323 AGGTCCATCCCGAAACCACACGCATTGTCCAACGTGTGTTCCACCGAACGAAGGTCACGG 382
Query 429 TGTTGTTTCCTCATGCCTTAACTGTTTCCTAGCCGGTGGTGTCTTGTACCGGTTTGAGTA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGTTGTTTCCTCATGCCTTAACTGTTTCCTAGCCGGTGGTGTCTTGTACCGGTTTGAGTA 442
Query 489 CTCAGTCAACGCTGCTCACTTCCTCGTCAAAGCCAGAGGAGGAACTTGCACACTCGCTGT 548
|| |||||||||||||||||||| | |||||||||||||||||| || |||||||||||
Sbjct 443 TTCGGTCAACGCTGCTCACTTCCTTGCCAAAGCCAGAGGAGGAACCTGTACACTCGCTGT 502
Query 549 CGCTGACCCTAATGAGATTGTTGTTCACCGGGCCAAACACCTCCTTCAAAACGGATTTGG 608
||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 503 TGCTGATCCGAATGAGATTGTTGTTCACCGGGCTAAACACCTCCTTCAAAACGGATTTGG 562
Query 609 ATGTTATGACGTTTTCAAGAACAACTGTGAGGATTTCGCTATATATTGCAAAACCGCATT 668
||| || |||||||||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 563 ATGCTACGACGTTTTCAAGAATAACTGTGAGGATTTTGCTATATATTGCAAAACCGGATT 622
Query 669 GCTGGTTCTTGAGGGAAGGACAATGGGACAGAGCGGTCAGGCGGTTTCGATTATAGGTGG 728
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 623 GCTTGTTCTTGAGGGAAGGACAATGGGACAGAGCGGTCAGGCAGTGTCGATTATAGGTGG 682
Query 729 GCCGATTGCTGCGGTTTTGTCCACGCCAATGCGGCTTCTGACTACAAACGTGTATGGGAT 788
|| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 683 ACCAATTGCTGCAGTTTTGTCCACGCCGATGCGGCTTGTGACTACAAACGTTTATGGAAT 742
Query 789 GGCTGCTACAGCGATTGGTGTGTATTGTGCGAGTAGATACGCTACTGATATCGGAATGAG 848
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 743 GGCTGCTACTGCGATTGGTGTGTATTGTGCGAGTAGATACGCTACTGATATTGGAATGAG 802
Query 849 AGCTGACGTCGCGAAAGTTGAAGCAGAGGACCTCACAAGAAGGCTGTCTTCAGGACTTTT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AGCTGACGTCGCGAAAGTTGAAGCAGAGGACCTCACAAGAAGGCTGTCTTCAGGACTTTT 862
Query 909 CCAAGTACTTGATCCTCCATTGGCAGCCATAGCTTTACCAAGCACGAGTT----GATAAG 964
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 863 CCAAGTACTTGAACCTCCATTGGCAGCCATAGCTTTACCAAGCACGAGTTAATAGATAAG 922
Query 965 CTTAAGCTTCACCAGCTTATCCCACTGTTGTATTTT 1000
|||||||||||||||| |||| ||||||||||||||
Sbjct 923 CTTAAGCTTCACCAGCGTATCTCACTGTTGTATTTT 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5