BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06380.1

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940079 jgi|Araly1|940079|scaffold_600623.1                        634    0.0  


> Ahg940079 jgi|Araly1|940079|scaffold_600623.1
Length=482

 Score =  634 bits (343),  Expect = 0.0
 Identities = 410/439 (93%), Gaps = 17/439 (4%)
 Strand=Plus/Plus

Query  324  AAACAACCGAGTCTCCGTCGAAGTCTATCAACGCCGTC-TCTATGTGGCGGAGGATCTAC  382
            |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  37   AAACAACCGAGTCTCCGTCGAAGTCTATCAACGCCGTCGT-TATGTGGCGGAGGATCTAC  95

Query  383  GACGGCTGAGTGTTGCGGTGGTACGACGGCGAGTTGTGCAGCCTTATGTCTATGCGCTCC  442
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  96   GACGGCTGAGTGTTGCGGTGGTACGACGGCGAGTTGTGCCGCCTTATGTCTATGCGCCCC  155

Query  443  TTGTAGCGTCGTGAATCTCGTCGTACTCGCTGTATACAAGCTCCCTCGTGGACTCTGCCG  502
            |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct  156  TTGTAGCGTCGTGAATCTCGTCGTTCTCGCTGTGTACAAGCTCCCTCGTGGACTATGCCG  215

Query  503  CCGCGCAATCCGCCGTATACGACGGA-AACGATTAGCGAAAAAGGAGT-TTGTAGAGAGT  560
            |||||||||||||||||||||||||| || ||||||| |||||||||| || ||||||||
Sbjct  216  CCGCGCAATCCGCCGTATACGACGGAGAA-GATTAGCAAAAAAGGAGTGTT-TAGAGAGT  273

Query  561  GGAAGAGAGTTTGGTAGAGGAGGGAGTTCTCAATTCGCTGTTCACCCGTTAGAGAG-CAG  619
             |  ||||| |||||| || ||||||||||||||||||||||||||| |||||||| || 
Sbjct  274  -G--GAGAGCTTGGTAAAGTAGGGAGTTCTCAATTCGCTGTTCACCCATTAGAGAGCCA-  329

Query  620  AGATGAGgaagaagaagaagaagaagaagaTGAGGCTGTGATTGCGTTGGAGAAGGAGAT  679
            ||||      || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  330  AGAT------GACGAAGAAGAAGAAGAAGATGAGGCTGTGATTGCGTTAGAGAAGGAGAT  383

Query  680  GTGGAGCAGATTTTACAGTGGTGGTTTCTGGCGAAGCCTTTCTCAAGCTGAAACGGCGTC  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  GTGGAGCAGATTTTACAGTGGTGGTTTCTGGCGAAGCCTTTCTCAAGCTGAAACGGCGTC  443

Query  740  GTCTCCCAAAAACAATTAG  758
            |||||||||||||||||||
Sbjct  444  GTCTCCCAAAAACAATTAG  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35949910731


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5