BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06390.1
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487448 jgi|Araly1|487448|fgenesh2_kg.6__582__AT5G06390.1 2342 0.0
Ahg478515 jgi|Araly1|478515|fgenesh2_kg.3__1216__AT3G11700.1 1114 0.0
> Ahg487448 jgi|Araly1|487448|fgenesh2_kg.6__582__AT5G06390.1
Length=1921
Score = 2342 bits (1268), Expect = 0.0
Identities = 1439/1523 (94%), Gaps = 6/1523 (0%)
Strand=Plus/Plus
Query 1 AAAGAAAGTAAACTCTTTCACCaaaaaaaaTAAAGAAAATTTATTGTTCCATCTTTCTGA 60
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1 AAAGAAAGTAAACTCTTTCACC--AAAAAAGAAAGAAAATTTATTGTTCCATCTTTCTGA 58
Query 61 TAATCGGATCTTACAGAGAGAGAGCTCCATGGATCGCCGCATCTATGGTGGCTCCGCCGT 120
||||| |||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 59 TAATCCGATCTTAC--AGAGAGAGCTCCATGGGTCGTCGCATCTATGGTGGCTCCGCCGT 116
Query 121 CATTCATCTCTTTCTCTTCTTCTCCGTCCTAATCTTCTCCGCCGCATCTGCATTATCCAA 180
||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 117 CATTCATATCTTTCTTTTCTTCTTCGTCCTAATCTTCTCCGCCGCATCTGCATTATCCAA 176
Query 181 GAACCAGTCTCCTTCTTCCGGGTCGGGTCAGATCAACTCCAACTCTGTCCTCGTAGCTCT 240
||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 GAACCCGAATCCTTCTTCCGGGTCAGGTCAGATCAACTCCAACTCTGTCCTCGTAGCTCT 236
Query 241 TCTTGACTCTCGTTACACTGAGCTAGCTGAGCTCGTCGAGAAAGCTCTTCTCCTTCAGAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 TCTTGACTCTCGTTACACTGAGCTAGCTGAGCTCGTCGAGAAAGCTCTTCTCCTCCAGAC 296
Query 301 ACTTGAAGACGCTGTTGGTCGTCACAATATTACCATTTTTGCTCCTCGCAATGAAGCTCT 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 ACTTGAAGACGCTGTTGGTCGTCACAATATTACCATTTTTGCCCCTCGCAATGAAGCTCT 356
Query 361 TGAGCGTGACCTTGACCCTGAGTTCAAGCGGTTCTTGCTCGAGCCAGGTAATCTCAAATC 420
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 357 TGAACGTGACCTTGACCCTGAGTTCAAGAGGTTCTTGCTCGAGCCAGGTAATCTCAAATC 416
Query 421 TCTGCAAACACTCCTCATGTTCCACATTATACCCAATCGGGTCGGGTCGAACCAATGGCC 480
||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 417 TCTCCAAACACTCCTAATGTTCCACATTATACCCAATCGGGTCGGGTTGGACCAATGGCC 476
Query 481 TTCAGAAGAATCGGGTCGGGTCAAGCACCACACGCTAGGGAACGATCAGGTCCGTTTGAG 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 477 TCCAGAAGAATCGGGTCGGGTCAAGCACCACACGCTAGGGAACGATCAGGTCCATTTGAG 536
Query 541 CAACGGACAAGGAAAAAAGATGGTTGATTTAGCTGAGATTATCCGACCCGATGATTTGAC 600
||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 537 CAATGGAGAAGGAAAAAAGATGGTTGATCTAGCTGAGATTATCCGACCCGATGATTTGAC 596
Query 601 CCGACCCGACGGATTGATCCACGGGATTGAACGGCTTCTCATTCCTCGCTCTGTTCAAGA 660
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 597 CCGACCCGACGGATTGATCCACGGGATCGAACGGCTTCTCATTCCTCGCTCCGTTCAAGA 656
Query 661 AGATTTCAATCGCCGTCGTAGCCTTCAATCAATCTCCGCCGTCTTACCTGAAGGAGCTCC 720
|||||||||||| ||||||||||| || |||||| ||||||| ||||| |||||||||||
Sbjct 657 AGATTTCAATCGTCGTCGTAGCCTCCAGTCAATCACCGCCGTTTTACCCGAAGGAGCTCC 716
Query 721 TGAAGTTGACCCGAGAACCAACCGTCTCAAGAAACCCGCAGCTCCAGTACCCGCCGGATC 780
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 717 TGAAGTTGACCCGAGAACCAACCGTCTTAAGAAACCTGCAGCTCCAGTCCCCGCCGGATC 776
Query 781 TCCACCAGCTCTTCCGATCCAATCCGCTATGGCCCCTGGTCCGTCGCTAGCTCCGGCACC 840
|||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 777 TCCACCGGCTCTTCCGATCCAATCCGCCATGGCTCCTGGTCCATCGCTAGCTCCGGCACC 836
Query 841 AGCTCCGGGACCTGGAGGCAAGCAGCACCACTTCGACGGTGAGGCTCAAGTCAAAGATTT 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 AGCTCCGGGACCTGGAGGCAAGCAGCACCACTTCGACGGTGAAGCTCAAGTCAAAGATTT 896
Query 901 CATCCATACACTGTTACATTACGGCGGTTACAACGAGATGGCAGATATTCTCGTGAATCT 960
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 897 CATCCACACACTGTTACATTACGGCGGTTACAACGAGATGGCGGACATTCTCGTGAATCT 956
Query 961 GACGTCACTCGCGACAGAGATGGGACGGTTGGTGTCAGAAGGCTATGTGTTAACGGTT-T 1019
||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||| |
Sbjct 957 GACGTCACTCGCGACGGAGATGGGTCGCTTGGTGTCAGAAGGCTATGTGTTGACGGTTCT 1016
Query 1020 TGGCTCCTAACGATGAAGCAATGGCGAAATTGACCACGGATCAGCTGAGTGAGCCAGGAG 1079
|| |||||||||| || || ||||||||| |||| ||||||||| |||||||||||||||
Sbjct 1017 TG-CTCCTAACGACGACGCTATGGCGAAACTGACGACGGATCAGTTGAGTGAGCCAGGAG 1075
Query 1080 CACCGGAGCAGATCGTATACTACCATATAATCCCTGAGTATCAAACGGAGGAGAGTATGT 1139
||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 CACCGGAGCAGATTGTGTATTACCATATTATCCCTGAGTATCAAACGGAGGAGAGTATGT 1135
Query 1140 ACAATTCTGTTAGGAGATTTGGGAAGGTGAAGTTCGATACGTTGCGTTTTCCTCATAAGG 1199
|||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 1136 ACAATTCTGTTAGGAGATTTGGGAAGGTGAAGTTTGATACGCTGCGCTTTCCTCATAAGG 1195
Query 1200 TTGCGGCTAAGGAAGCTGATGGTTCCGTTAAGTTTGGTGACGGTGAGAAGTCGGCGTATT 1259
||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1196 TTGCGGCTAAGGAAGCTGACGGTTCGGTTAAGTTTGGTGACGGTGAAAAGTCAGCGTATT 1255
Query 1260 TGTTTGATCCTGATATCTATACGGACGGTCGGATTTCGGTTCAGGGGATTGACGGTGTTT 1319
|||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| |||||||
Sbjct 1256 TGTTCGATCCTGATATTTATACCGATGGTCGAATTTCGGTTCAAGGGATTGATGGTGTTT 1315
Query 1320 TGTTTCCACAAGAGGAGGAGGTTGTTGAATCGGTTAAGAAACCGGTTAAGAAAATTGTTC 1379
|||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1316 TGTTCCCTCAAGAGGAGGAGATTGTTGAATCGGTTAAGAAACCGGTTAAGAAAGTTGTTC 1375
Query 1380 AGCCGAGAAGAGGGAAATTGTTGGAAGTAGCCTGTAGTATGCTTGGTGCTTTTGGCAAGG 1439
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1376 AGCCGAGAAGAGGGAAATTGTTGGAAGTAGCCTGTAGCATGCTTGGTGCTTTTGGCAAGG 1435
Query 1440 ACACTTATCTCAGCAAATGCCGGTGAATTCGCAAACCCGCCAAAGAATTGATGTAAACAC 1499
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1436 AAACTTATCTCAGCAAATGCCGGTGAATTCGCAAACCCGCCAAAGAATTGACGTAAACAC 1495
Query 1500 ATTCAAAAAGCTGATTGAAGGTT 1522
|||||||||||||||||||||||
Sbjct 1496 ATTCAAAAAGCTGATTGAAGGTT 1518
Score = 204 bits (110), Expect = 3e-51
Identities = 121/126 (96%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 1991 CGTGGACATGGGAAATGAGTTGGTTCAGGCTGTGTTTGTTGATTATTGGAGGACAAACTC 2050
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 1797 CGTGGACATGGGAAATGAGTTGGCTCAGGCTGTGTTTGTTGATTATTGGAGGAAAAACAC 1856
Query 2051 AAAACTTAGCTGTCTTTGTGAGAAATCTCAAGTCTTAATACTGAAGTTGTCTGAATTTTG 2110
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1857 -AAACTTAGCTGTCTTTGTGAGAAATCTCAAGTCTTAATACTGAAGTTGTCTAAATTTTG 1915
Query 2111 TTTTTC 2116
||||||
Sbjct 1916 TTTTTC 1921
Score = 196 bits (106), Expect = 4e-49
Identities = 131/142 (92%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 1622 tttttttCTTTAAATATATAT-TTTTggggggggggggggggggTGTTTGGTCTTCATGG 1680
||||||||||| || |||| |||| |||||||||||||||||||||||||| | |||
Sbjct 1530 TTTTTTTCTTTTTTTAAATATATTTT-GGGGGGGGGGGGGGGGGTGTTTGGTC-T--TGG 1585
Query 1681 ATTATGAATACTGTAATTAGA-TATATCAATCATTTTTTAATTAATTTGGTGGTGTATGA 1739
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1586 ATTATGAATACTGTAATTAGATTATATCAATCATTTTTTAATTAATTTGGTGGTGTATGA 1645
Query 1740 GAATGAGAGTACACTAAATAAA 1761
||||||||||||| ||||||||
Sbjct 1646 GAATGAGAGTACAATAAATAAA 1667
> Ahg478515 jgi|Araly1|478515|fgenesh2_kg.3__1216__AT3G11700.1
Length=1899
Score = 1114 bits (603), Expect = 0.0
Identities = 1087/1317 (83%), Gaps = 48/1317 (4%)
Strand=Plus/Plus
Query 198 CCGGGTCGGGTCAGATCAACTCCAACTCTGTCCTCGTAGCTCTTCTTGACTCTCGTTACA 257
||||||||||||| |||||||| ||||| |||||||| ||||| || |||||||||||||
Sbjct 222 CCGGGTCGGGTCAAATCAACTCAAACTCCGTCCTCGTTGCTCTCCTCGACTCTCGTTACA 281
Query 258 CTGAGCTAGCTGAGCTCGTCGAGAAAGCTCTTCTCCTTCAGACACTTGAAGACGCTGTTG 317
|||| || || |||||||| ||||| |||||||| || || || || |||||||| ||||
Sbjct 282 CTGAACTCGCCGAGCTCGTTGAGAAGGCTCTTCTTCTCCAAACCCTCGAAGACGCCGTTG 341
Query 318 GTCGTCACAATATTACCATTTTTGCTCCTCGCAATGAAGCTCTTGAGCGTGACCTTGACC 377
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 342 GTCGTCACAATATTACTATTTTTGCTCCTCGCAATGAAGCACTCGAGCGTGACCTTGACC 401
Query 378 CTGAGTTCAAGCGGTTCTTGCTCGAGCCAGGTAATCTCAAATCTCTGCAAACACTCCTCA 437
| || || || |||||||||||| | |||||||| ||||||||||| ||||| || |||
Sbjct 402 CGGATTTTAAACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTCCAAACGCTTCTCT 461
Query 438 TGTTC-CACATTATACCCAATCGGGTCGGGTCGAACCAATGGCCTTCAGAAGAA-TCGGG 495
|| || |||||||| ||||| || ||||| || ||||||||||| | || | || |||||
Sbjct 462 TG-TCTCACATTATCCCCAAACGAGTCGGTTCAAACCAATGGCC-TGAGGATAATTCGGG 519
Query 496 TCGGGTCAAGCACCACACGCTAGGGAACGATC-AG-G-TCCGTTTGAG------CAACGG 546
||||||||| ||| |||| ||||| | || | || | | | |||||| ||| ||
Sbjct 520 TCGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGTAAACTCAAAGG 579
Query 547 A-C-AA-GGAAAAAAGA-TGGTTG-ATTTAGCTG-AGATTATCCGACCCGATGATTTGAC 600
| | || || ||| ||| ||| || ||| |||| | |||| ||||||||||||||||||
Sbjct 580 AGCGAATGG-AAAGAGATTGG-TGAATTCCGCTGTA-ATTACCCGACCCGATGATTTGAC 636
Query 601 CCGACCCGACGGATTGATCCACGGGATTGAACGGCTTCTCATTCCTCGCTCTGTTCAAGA 660
|||||||||||| ||||||||||| || ||| ||||| | || |||||||| ||||||||
Sbjct 637 CCGACCCGACGGGTTGATCCACGGAATCGAAAGGCTTTTAATCCCTCGCTCCGTTCAAGA 696
Query 661 AGATTTCAATCGCCGTCGTAGCCTTCAATCAATCTCCGCCGTCTTACCTGAAGGAGCTCC 720
||||||||| || || | | || | |||||||||||| || ||||| |||||||||||
Sbjct 697 AGATTTCAACCGTCGGAGAAATCTCCGATCAATCTCCGCGGTATTACCCGAAGGAGCTCC 756
Query 721 TGAAGTTGACCCGAGAACCAACCGTCTCAAGAAACCCGC-A--GCT-CC--AGTACCCGC 774
||| | || |||||||||||||||||||||||| |||| | || || |||||||||
Sbjct 757 GGAAATCGATCCGAGAACCAACCGTCTCAAGAAATCCGCCACCGCCGCCTCAGTACCCGC 816
Query 775 CGGATCTCCACCAGCTCTTCCGATCCAATCCGCTATGGCCCCTGGTCCGTCGCTAGCTCC 834
||||||||||||||| |||||||| ||||||||||||| || |||||||||||||| ||
Sbjct 817 CGGATCTCCACCAGCGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCGTCGCTAGCCCC 876
Query 835 GGCACCAGCTCCGGGACCTGGAGGCAAGCAGCAC-CACTTCGACGGTGAGGCTCAAGTCA 893
||| || ||||||||||| ||||| ||| || |||||| |||| || ||||| ||||
Sbjct 877 GGCTCCGGCTCCGGGACCAGGAGGTGCGCA-CAAACACTTCAACGGGGATGCTCAGGTCA 935
Query 894 AAGATTTCATCCATACACTGTTACATTACGGCGGTTACAACGAGATGGCAGATATTCTCG 953
||||||||||||| ||| |||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 936 AAGATTTCATCCACACATTGTTACATTACGGCGGATACAACGAAATGGCCGATATTCTTG 995
Query 954 TGAATCTGACGTCACTCGCGACAGAGATGGGACGGTTGGTGTCAGAAGGCTATGTGTTAA 1013
| |||||||||||||| |||||||||||||| || || ||||| ||||| || || | |
Sbjct 996 TAAATCTGACGTCACTGGCGACAGAGATGGGTCGATTAGTGTCGGAAGGTTACGTCCTCA 1055
Query 1014 CGGTTTTGGCTCCTAACGATGAAGCAATGGCGAAATTGACCACGGATCAGCTGAGTGAGC 1073
| || || ||||||||||| ||||| |||||||||||||| || |||||||| || ||||
Sbjct 1056 CCGTGTTAGCTCCTAACGACGAAGCTATGGCGAAATTGACGACAGATCAGCTTAGCGAGC 1115
Query 1074 CAGGAGCACCGGAGCAGATCGTATACTACCATATAATCCCTGAGTATCAAACGGAGGAGA 1133
| ||||| |||||||| || | || || || || || || |||||||||||||||||||
Sbjct 1116 CCGGAGCTCCGGAGCAAATTATGTATTATCACATTATACCGGAGTATCAAACGGAGGAGA 1175
Query 1134 GTATGTACAATTCTGTTAGGAGATTTGGGAAGGTGAAGT-TCGATACGTTGCGTTTTCCT 1192
||||||| ||||| ||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 1176 GTATGTATAATTCGGTTAGGAGATTTGGGAAGGTGAAGTAT-GAAACGCTGCGTTTTCCT 1234
Query 1193 CATAAGGTTGCGGCTAAGGAAGCTGATGGTTCCGTTAAGTTTGGTGAC-GGTGAGAAGTC 1251
|| ||||||| |||||| ||||| ||||| || |||||||| ||| | ||||| |||
Sbjct 1235 CACAAGGTTGGGGCTAAAGAAGCCGATGGCTCGGTTAAGTTCGGTT-CTGGTGATCGGTC 1293
Query 1252 GGCGTATTTGTTTGATCCTGATATCTATACGGACGGTCGGATTTCGGTTCAGGGGATTGA 1311
||||||| | |||||||| ||||| || || ||||| || ||||| ||||||||||||||
Sbjct 1294 GGCGTATCTCTTTGATCCGGATATTTACACCGACGGGCGAATTTCTGTTCAGGGGATTGA 1353
Query 1312 CGGTGTTTTGTTTCCACAAGAGGAGGAGGTTGTTGA-ATCGGTTAAGAAA-C--C-GGT- 1365
||||||||||| || | |||||| ||| | || | ||||||||||| | | |||
Sbjct 1354 TGGTGTTTTGTT-CC-CG-GAGGAGAAGGAAGAAGAGA-CGGTTAAGAAAACGACCGGTC 1409
Query 1366 ---T-AAGAAAATTGTTCAGCCGAGAAGAGGGAAATTGTTGGAAGTAGCCTGTAGTATGC 1421
| |||||| |||||||||| ||||||||||| ||| |||||||||| ||||| ||||
Sbjct 1410 CGGTTAAGAAAGTTGTTCAGCCAAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAGAATGC 1469
Query 1422 TTGGTGCTTTTGGCAAGGACACTTATCTCAGCAAATGCCGGTGAATTCGCAAACCCG 1478
|||| ||| ||||||||||| | ||||| || | |||| | || |||| ||||||||
Sbjct 1470 TTGGAGCTATTGGCAAGGACTCATATCTAAGTAGATGCTGATGGATTCACAAACCCG 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79608612050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5