BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06410.1
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487450 jgi|Araly1|487450|fgenesh2_kg.6__584__AT5G06410.1 1260 0.0
> Ahg487450 jgi|Araly1|487450|fgenesh2_kg.6__584__AT5G06410.1
Length=945
Score = 1260 bits (682), Expect = 0.0
Identities = 870/954 (91%), Gaps = 39/954 (4%)
Strand=Plus/Plus
Query 45 ATGGTGGCTTCCATCTCCACCCTTATTAGACGGACCTATCCTTCAACTAAC-CAGTGTAA 103
|||||||||||||| |||| ||||||||||| |||||||||| |||| | | ||||||
Sbjct 1 ATGGTGGCTTCCATGACCACTCTTATTAGACGAACCTATCCTTTAACT-TCTCGGTGTAA 59
Query 104 TTCACTCGCG---A------CGATTCAATCACAAACCCAATTGCCTCGCGAATCTCTGCA 154
|||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCACTCGCGACAATTGCTGCGATTCAATCACAAACCCAATTGCCTCGCGAATCTCTGCA 119
Query 155 ACATCATTCTTCAGCTGAGGGACGACTCCGATTCTCCGGGAGAGTTTTCTGCTCGGAATC 214
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 120 ACATCATTCTTCAGCTGAGGGACGACTCCGATTTTCCGGGAGAGTTTTCTGCTCGGAAAC 179
Query 215 TGGCGCC-------G--G--A-------TGCTGGAACTGTGGCGAGAAAGCTGCCTTTTT 256
||||||| | | | ||||||||||||||||| ||||||||||||||
Sbjct 180 TGGCGCCGAGGAGAGAAGAAACTCCGGCTGCTGGAACTGTGGCGAAAAAGCTGCCTTTTT 239
Query 257 GTTCTGTAACTCATGCCGTAGCATTCAACCTGTTGATGACTCCGTCGACTATTTTCAGAT 316
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GTTCTGTAACTCATGCCGTAGCATTCAACCTGTTGATGATTCCGTCGACTATTTTCAGAT 299
Query 317 TTTTGGCCTGGAGAAGAAGTATGAGATAGATCCTGGAAGCCTTGAAGGCAAGTACAAAGA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTTGGCCTGGAGAAGAAGTATGAGATAGATCCTGGAAGCCTTGAAGGCAAGTACAAAGA 359
Query 377 TTGGCAAAAGAAGCTACATCCTGATTTAGTTCATAACAAATCTAAGAAAGAACGAGACTA 436
||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 360 TTGGCAAAAGAAGTTACATCCTGATTTAGTTCACAACAAATCCAAGAAAGAACGGGATTA 419
Query 437 CGCAGCCGAGCAGTCTGCAAAGGTGACTGAAGCGTGCCGGACATTAACAAAGCGGCTGTC 496
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct 420 CGCAGCCGAGCAGTCTGCGAAGGTGACTGAAGCATGCCGGACATTGACCAAGCGGCTGTC 479
Query 497 GAGAGCAATGTATATCATGAAGCTGAATGGTGTAAATGTCAATGAAGAAGAAACAATAAC 556
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 GAGAGCAATGTATATTATGAAGCTGAATGGCGTAAATGTCAATGAAGAAGAAACAATAAC 539
Query 557 AGACCCAACATTGTTAATGGAGATTATGGAACTCAGAGAGGCCATATCAGAAGCAGATGA 616
|||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 540 TGACCCAACTTTGTTAATGGAAATTATGGAACTCAGAGAGACAATATCAGAAGCAGATGA 599
Query 617 TTCAACATCGTTAAACCAGATCCGATCCCAGGTACAAGAGAAACTAAAGCAATGGTCTGA 676
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TTCAACAGCGTTAAACCAGATCCGATCCCAGGTACAAGAGAAACTGAAGCAATGGTCTGA 659
Query 677 CTCTTTCGTCGAAGCGTTTGAAAGCCAGAAGTTTGATGATGCTGTAAAATGTATACAGAG 736
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 660 CTCTTTTGTCGAAGCGTTTGAAAGCCAGAGGTTTGATGATGCTGTAAAATGCATACAGAG 719
Query 737 AATGACTTATTACGAGCGAGCCTGCGAAGAAATTTTGAAGAAGCTATGAGGCAATTAGTC 796
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 720 AATGACTTATTACGAGCGAGCCTGTGAAGAAATTGTGAAGAAGCTATGAGGCAAGTAGTC 779
Query 797 CTCCCTTAAAAACGAACACGttttttttt-ATGTTTGCCTTATAGCTTTACGGGTCACAT 855
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 780 CTCCCATAAAAACGAACACGTTTTTTTTTTATGTTTGCCTTATAGCTTTACCGGTCACAT 839
Query 856 TTGAAAGGAACAGATCATGGCTCATAACTGAAAGTATCTTAGCTACATGTTTTAGTTTAG 915
||||| |||||| |||||| ||||||||| || ||||||||||| |||||||||||| ||
Sbjct 840 TTGAAGGGAACACATCATGTCTCATAACTTAA-GTATCTTAGCTTCATGTTTTAGTTAAG 898
Query 916 TTAT-ATAGAACAGAGGACTCTGTATTTGTAATAAGAGGATTTACAGATTTCGT 968
| || |||||||||||| || | | |||||||||| |||||||||||||||
Sbjct 899 T-ATCATAGAACAGAGGGCT-T-T----GTAATAAGAGTATTTACAGATTTCGT 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35949910731
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5