BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06430.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892570 jgi|Araly1|892570|Al_scaffold_0006_566 878 0.0
Ahg892614 jgi|Araly1|892614|Al_scaffold_0006_610 841 0.0
> Ahg892570 jgi|Araly1|892570|Al_scaffold_0006_566
Length=579
Score = 878 bits (475), Expect = 0.0
Identities = 538/568 (95%), Gaps = 5/568 (1%)
Strand=Plus/Plus
Query 82 ACTACGAGCTCTTCT-ACTTCAAAAGATCCATTCTTTTGCTTGAAATGGCCATGGGATTC 140
||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 ACTACGAGCGCGTCTGA-TTCAAAAGATCCATTCTTTTGCTTGAAATGGCCATGGGATTC 74
Query 141 AAACAAACAACCCAAATCCTCTTCAAGCGTCTGCGACTTTCAAGGACCGTGGCTCTTCAG 200
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 75 TAACAAACAACCCAAA---TCTTCAAGCGTCTGCGACTTTCAAGGTCCGTGGCTCTTCAG 131
Query 201 ATCTATGCAAACTATTGGCTCCATTGCTCTCAGCTCTTTGACTTCATTTGGCCAAAACCC 260
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 132 ATCTATGCAAACTATTGGTTCAATTGCTCTCAGCTCCTTGACTTCATTTGGTCAAAACCC 191
Query 261 CAATTTCAGACCAAAGAAGAAGCCTTTAAGCAGTAGTGAGCAAGGAGAAGCAGAGCAGAG 320
|||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 192 CAATTTTAGACCAAAGAAGAAGCCTTTAAGTAGTTGTGAGCAAGGAGAAGCAGAGCAGAT 251
Query 321 GGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACGGTTCTTGAATTTTACTCACA 380
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 252 GGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACAGTGCTTCAATTTTACTCACC 311
Query 381 CAAATGCAGACTCTGCAATTCTTTGCTCAAATTTGTTTTAGAGGTAGAGAAAAGGAATTC 440
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 312 CAAATGCAGACTCTGCAATTCTTTGCTCAACTTTGTTTTAGAAATAGAGAAAAGGAATTC 371
Query 441 AAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAAATGGTTTCCTGAGCTTCT 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAAATGGTTTCCTGAGCTTCT 431
Query 501 CCACTATGACGTAAAGTATGTTCCTTGCTTCGTTTTGTTGGACAAAAATGGACAAGCTTT 560
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCACTATGACATAAAGTATGTTCCTTGCTTCGTTTTGTTGGACAAAAATGGACAAGCTTT 491
Query 561 GGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATCGCCGGTATCTCTCATCTTCT 620
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 492 AGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATTGCCGGTATCTCTCATCTTCT 551
Query 621 CAAGATGAAGCGACCACCATCTAAGTAG 648
|||||||||||||||||| ||| |||||
Sbjct 552 CAAGATGAAGCGACCACCCTCTGAGTAG 579
> Ahg892614 jgi|Araly1|892614|Al_scaffold_0006_610
Length=585
Score = 841 bits (455), Expect = 0.0
Identities = 537/576 (93%), Gaps = 8/576 (1%)
Strand=Plus/Plus
Query 64 ATGGAATCAAAGGTTACT-ACTACGAGCTCTTCTACTTCAAAAGATCCATTCTTTTGCTT 122
||||||||||| | | | ||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCAAA-G--A-TGACTACGAGCGCGTCTACTTCAAAAGATCCATTCTTTTGCTT 56
Query 123 GAAATGGCCATGGGATTCAAACAAACAACCCAAATCCTCTTCAAGCGTCTGCGACTTTCA 182
||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 57 GAAATGGCCTTGGGATTCTAACAAACATCCCAAA---TCTTCAAGCGTCTGCGACTTTCA 113
Query 183 AGGACCGTGGCTCTTCAGATCTATGCAAACTATTGGCTCCATTGCTCTCAGCTCTTTGAC 242
||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||
Sbjct 114 AGGACCGTGGCTCTTCAGATCTATGCAAACTGTTGGTTCAATTGCTCTCAGCTCCTTGAC 173
Query 243 TTCATTTGGCCAAAACCCCAATTTCAGACCAAAGAAGAAGCCTTTAAGCAGTAGTGAGCA 302
||||||||| |||||| ||||||| |||||||||||||| |||||||| ||| |||||||
Sbjct 174 TTCATTTGGTCAAAACTCCAATTTTAGACCAAAGAAGAAACCTTTAAGTAGTTGTGAGCA 233
Query 303 AGGAGAAGCAGAGCAGAGGGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACGGT 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 234 AGGAGAAGCAGAGCAGATGGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACAGT 293
Query 363 TCTTGAATTTTACTCACACAAATGCAGACTCTGCAATTCTTTGCTCAAATTTGTTTTAGA 422
||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 294 GCTTCAATTTTACTCACCCAAATGCAGACTCTGCAATTCGTTGCTCAACTTTGTTTTAGA 353
Query 423 GGTAGAGAAAAGGAATTCAAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAA 482
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGTAGAGAAGAGGAATTCGAACTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAA 413
Query 483 ATGGTTTCCTGAGCTTCTCCACTATGACGTAAAGTATGTTCCTTGCTTCGTTTTGTTGGA 542
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 414 ATGGTTTCCTGAGCTTCTCCACTATGACATAAAGTATGTTCCTTGCTTCGTTTTGTTGGA 473
Query 543 CAAAAATGGACAAGCTTTGGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATCGC 602
|||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||
Sbjct 474 CAAAAATGGACAAGCTTTGGCCAAAACAGGAGTTCCAACTAGTCGTGCTCACGTCATTGC 533
Query 603 CGGTATCTCTCATCTTCTCAAGATGAAGCGACCACC 638
|||||||||||||||||||||||||||||| |||||
Sbjct 534 CGGTATCTCTCATCTTCTCAAGATGAAGCGCCCACC 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5