BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06440.4
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487451 jgi|Araly1|487451|fgenesh2_kg.6__585__AT5G06440.3 2215 0.0
> Ahg487451 jgi|Araly1|487451|fgenesh2_kg.6__585__AT5G06440.3
Length=1673
Score = 2215 bits (1199), Expect = 0.0
Identities = 1404/1496 (94%), Gaps = 41/1496 (3%)
Strand=Plus/Plus
Query 374 AAGGTGGA-AGCTTGAGATTATGCAGAAGAAACGAGAGATCTGTG-GTTATAGAGACAAA 431
||||| || ||||||||| |||||||||||||||||||||||||| | |||||||| |||
Sbjct 123 AAGGT-GAGAGCTTGAGA-TATGCAGAAGAAACGAGAGATCTGTGAG-TATAGAGAAAAA 179
Query 432 TTAGACAAGACCTTATCTTCTCCTGAACTCACTAATCACGAGACTCTCAAATCTCTTCTC 491
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTAGACAAGACCTTGTCTTCTCCTGAACTCACTAATCACGAGACTCTCAAATCTCTTCTC 239
Query 492 AGAAACCAGCTTGAAGAGTGTGATGAGAATATATTGGATAAAAGAACAGATGATGTATCC 551
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAACCAGCTTCAAGAGTGTGATGAGAATATATTGGATAAAAGAACAGATGATGTATCC 299
Query 552 AAGTTACTTAGCAAGCTTAGGAGTGTTTCCATGACTGATCATCAAGTTTCTAAATTAACC 611
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 300 AAGTTACTTAGCAAGCTTAGGAGTGTTTCAATGACGGATCATCAAGTTTCTAAATTAACC 359
Query 612 AACGATGGTGATTGGAAATTGAAACATGATCTTGAAGATTGCCGTGTTATGTACCGTGAA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AACGATGGTGATTGGAAATTGAAACATGATCTTGAAGATTGCCGTGTTATGTACCGTGAA 419
Query 672 GGACTCGATGGAAGTCCTTTTCACACATTGCTCGTTGAAGGTTACATGGATGGTCCTATC 731
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 420 GGGCTCGATGGAAGTCCTTTTCACACGTTGCTCGTTGAAGGTTACATGGATGGGCCTATC 479
Query 732 CACGAATGTTTATGCGTATCGTGGGAATCAACTCTCTACAAGAAATGGTGGCCACAATAT 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CACGAATGTTTATGCGTATCGTGGGAATCAACTCTCTACAAGAAATGGTGGCCACAGTAT 539
Query 792 GCGTTTCCTCCATTCAGGATCTTAAAAAGCACATGCTTGCAAAAGGTCGGGGTCGGTGAA 851
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCATTTCCTCCATTCAGGATCTTAAAAAGCACATGCTTGCAAAAGGTCGGGGTCGGTGAA 599
Query 852 CAAATTTGTTTAGCAAGGTTTGTCCATATTGAAAACAAGGATGAAGTACCATGGCCATTG 911
|||||||||||||| | | | | || | | | |||||||||||||||
Sbjct 600 CAAATTTGTTTAGCGA-G---G-----A-TG------A--A-G--GTACCATGGCCATTG 638
Query 912 ACGGAAAGAGAGATGATTCTGCACTATTTCTCTTTTGAATACTTTAAAGATGGCTTAGTC 971
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 639 ACGGAAAGAGAGATGATTCTGCACTATTTCTTTTTTGAATACTTTAAAGATGGCTTAATC 698
Query 972 GTCATCCTTCTGAACACGATCTCTGATTTAAATAGCATTGGAGTTTCCTCTACGGACATC 1031
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 699 GTCATCCTTCTGAACACGATCTCTGATTTAGATAGCATTGGAGTTTCCTCTAAGGACATC 758
Query 1032 ATCATACCTGAATCACCGGATGCAGTGAGGATGGATCTCGTAGGCGGATTTGTTTTACAA 1091
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 759 GTCATACCTGAATCACCGGATGCAGTGAGGATGGATCTTGTAGGCGGATTTGTTTTACAA 818
Query 1092 AAGGTTACTCCACAGAGGAGTTACTTCAGAACGATAGGGGATATGGATATAAAGCTGGAC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAGGTTACTCCACAGAGGAGTTACTTCAGAACGATAGGGGATATGGATATAAAGCTGGAC 878
Query 1152 TTGATGCCACCATCTCTTATGAATTTTATATCTAGGCAGCTGATCGGCAACGGTTTCAGA 1211
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 879 TTGATACCACCATCTCTTATGAATTTTATATCGAGGCAGCTGATCGGCAACGGTTTCAGA 938
Query 1212 CTATATAAAAAGTCAGTTGCTTCCGTAGCTAAATTTGATGAAGATTACAGTAGAGCTTTA 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CTATATAAAAAGTCAGTTGCTTCCGTAGCTAAATTTGATGAAGATTACAGTAGAGCTTTG 998
Query 1272 ACTGATCCTTTGTATACTAAGATACGTCGAGCTCTATATTCAACTGATGAAGCAGTCGAG 1331
|||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||| | |||
Sbjct 999 ACTGATCCGTTGTACACTAAGATACGTCAAGCCCTATATTCAACTGATGAGGCAATTGAG 1058
Query 1332 GAAGAACCAAAGTTGGAAACCAATGAAGTAAATGGCG-TTACTTTGCCAAAGCACGAACA 1390
||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||
Sbjct 1059 GAAGAACCAAAGTTGGAAACCAATGAAGTGAATGGCGATTACCT-GCCAAAGCACGAACA 1117
Query 1391 CGAGAATAATGGAGATGCTAGTGTAAATAAACCTGTCCATTGCAGAAGAACTGTTCCCGA 1450
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1118 CGAGAATAATGGAGATACTAGTGTAAATAAACTTGTCCATTGTAGAAGAACTGTTCCCGA 1177
Query 1451 GATTGAGGAAGAAGAAG---AA--T-CTGAGGAAAGTGTTTAT-TCAGAGGATGGAAATG 1503
|||||| |||||||||| || | |||||||||| |||| | ||||||||||||||||
Sbjct 1178 GATTGAAGAAGAAGAAGTTGAAGATTCTGAGGAAAGCGTTT-TCTCAGAGGATGGAAATG 1236
Query 1504 AAATTGCCAAGACTCATGTGGATATGAGAAGACGGTTTTGCGTCAGTCCAGAGGTAGAAC 1563
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1237 AAATTGCCAAGACTCATGTGGATATCAGAAGACGGTTTTGCGTCAGTCCAGAGGTAGAAC 1296
Query 1564 AAGCTTTAGGGACTCTAGATAGAGTAATATTCATGGTTAGAAATATAACGCCAGTCCCAG 1623
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1297 AAGCTTTAGGGACTCTAGATAGAGTAATATACATGGTTAGAAATATAACGCCAGTCCCAG 1356
Query 1624 AAACTGAGGAATTGTCGCCAAATAGAGCAGATGATCAGGCAAAACAAGTGAGTGTATTAG 1683
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1357 AAACCAAGGAATTGTCGCCAAATAGAGCAGAGGATCAGGCAAAGCAAGTGAGTGTATTGG 1416
Query 1684 AGAACATTGAAAGTGTTCCTCAAACACAAGAGTCATCAAGCGATTTCAGTgaagaagaga 1743
|||||||||||||||||||||||| | |||||||| | ||||||| ||| |||||||||
Sbjct 1417 AGAACATTGAAAGTGTTCCTCAAAAAAAAGAGTCA--A-GCGATTTTAGTCAAGAAGAGA 1473
Query 1744 agagagaagagGATACGGGACAAAATCAGGGCATGTTAAACAAAGGTAAGAACTCGAGCT 1803
|||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1474 AGAGAGAAGAGGATACAGGACAAAAGCAGGGCATGTTAAACAAAGGTAAGAACTTGAGCT 1533
Query 1804 TGCAGAGAAAACGTAAAGCTCG-CTGCTTTGCTTTCAGGTCTTGGCTTTGAAGGAA 1858
||||||| || |||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1534 TGCAGAGGAATCGTAAAGC-CGGCTGCTTTGCTTTCAGGTCTTGGCTCTGAAGGAA 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5