BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06450.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487454 jgi|Araly1|487454|fgenesh2_kg.6__588__AT5G06450.1 1123 0.0
> Ahg487454 jgi|Araly1|487454|fgenesh2_kg.6__588__AT5G06450.1
Length=778
Score = 1123 bits (608), Expect = 0.0
Identities = 731/786 (93%), Gaps = 25/786 (3%)
Strand=Plus/Plus
Query 165 TTCATCACATGGCCTCCTTTGATGGGCCAAAGTTCAAGATGACTGATGGCTCCTATGTTC 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 7 TTCATCACATGGCCTCCTTTGATGGGCCAAAGTTCAAGATGACTGATGGCTCTTATGTTC 66
Query 225 AGACTAAGACCATTGATGTTGGATCATCAACAGATATCTCTCCATACCTTTCACTTATAA 284
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AGACCAAGACCATTGATGTTGGATCATCAACAGATATCTCTCCATACCTTTCACTTATAA 126
Query 285 GAGAAGATTCTATCTTGAATGGAAACCGAGCGGTGATCTTCGATGTGTACTGGGATGTGG 344
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 127 GAGAAGATTCTATCTTGAATGGAAACCGAGCTGTGATCTTCGATGTGTATTGGGATGTCG 186
Query 345 GGTTTCCTGAAACTGAAACCAAAACCAAAACGTCAGGGTGGAGTCTGTCATCGGTGAAGC 404
| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GATTTCCCGAAACTGGAACCAAAACCAAAACGTCAGGGTGGAGTCTGTCATCGGTGAAGC 246
Query 405 TGAGCACTAGAAA-CTTATGTCTCTTCCTTCGACTTCCTAAACCTTTTCATGACAATCTC 463
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TGAGCACGAGAAATCT-ATGTCTCTTCCTTCGACTTCCTAAACCTTTTCATGACAATCTC 305
Query 464 AAGGATCTGTACCGTTTCTTTGCTTCCAAGTTTGTCACTTTTGTTGGAGTGCAGATCGAG 523
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 AAGGATCTGTACCGTTTCTTTGCTTCCAAGTTTGTTACTTTTGTTGGAGTGCAGATCGAG 365
Query 524 GAAGACCTGGACTTGCTTAGAGAAAACCACGGTCTCGTGATAAGAAACGCGATTAACGTT 583
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 366 GAAGACCTGAACTTGCTTAGTGAAAACCACGGTCTTGTGATAAGAAACGCGATTAACATT 425
Query 584 GGGAAATTGGCTGCGGAAGCTCGTGGAACTCTGGTGCTTGAGTTTCTTGGGACAAGAGAA 643
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGGAAATTGGCTGCGAAAGCTCGTGGAACTCTGGTGCTTGAGTTTCTTGGGACAAGAGAA 485
Query 644 TTAGCGCACAGAGTATTGTGGTCTGATTTGGGCCAGCTGGATTCGATTGAGGCCAAATGG 703
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 TTGGCGCACAGAGTTTTGTGGTCTGATTTGGGTCAGCTGGATTCGATTGAGGCCAAATGG 545
Query 704 GAGAAGGCAGG-TCCTGAAGAACAACTTGAGGCTGCAGCCATTGAAGGGTGGCTCATCGT 762
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 546 GAGAAGGCAGGGTC-TGAAGAACAACTTGAGGCTGCAGCCATTGAAGGGTGGCTCATCTT 604
Query 763 CAATGTTTGGGATCAATTGTCCGAT---GAG---TGATTTACTACTTATCTCTGTGATTG 816
|||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||
Sbjct 605 CAATGTTTGGGATCAATTATCCGAGCCCGAGGAGTGATTTACTACTTATCTTTGTGATTG 664
Query 817 CTTCtttttttttt--tGGTTCTTTTGATGGAAATGACTTTGTACCTGAATCAAAGTGAT 874
|||||||||||| || ||| |||| | || | | || |||||| |||||||
Sbjct 665 CTTCTTTTTTTTGAAATGA--CTTGTGAT--AT-TG--T--G-AC-TGAATCTAAGTGAT 713
Query 875 CCTTTGTAAGTTGTTTGATGTGA-CAATCAACAATCACTAAACAAAAAGTGAACAGTTTC 933
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 714 CCTTTGTATGTTGTTTGATGTGATCA-TCAACAATCACTAAACAAAAAGTGAACAGTTTC 772
Query 934 AGATTC 939
|||||
Sbjct 773 GGATTC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5