BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06470.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487456 jgi|Araly1|487456|fgenesh2_kg.6__590__AT5G06470.1 1186 0.0
> Ahg487456 jgi|Araly1|487456|fgenesh2_kg.6__590__AT5G06470.1
Length=720
Score = 1186 bits (642), Expect = 0.0
Identities = 694/720 (96%), Gaps = 0/720 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACG 60
Query 61 TTGAAGCAAAGCTTAACTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGA 120
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAAGCAAGGCTTAGCTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGA 120
Query 121 GACGAAATAGTCGCTGAATCTGGTCAAAGCAAAGGTTGTGTTACACCAACACTACTAGAG 180
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 121 GACGAAATAGTCGCTGAATCTAGTCAAATCAAAGGTTGTGTTACACCAACACTACTAGAG 180
Query 181 CTTGAGGATGCAGAGGAACATAATCTTGAAGAAGAAAGAGGGATTCTTCTGGAGTTTAAA 240
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 181 CTTGAAGATGCAGAGGAACAGAATCTTGAAGAAGAAAGAGGGATTCTTTTGGAGTTTAAA 240
Query 241 GAGAATTGCCCACCCGGAGGAGAAGATTCGGTTGTATTCTACACGACGGGCCTGCGAAGT 300
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 241 GAGAATTGCCCACCCGGGGGAGAAGATTCGGTTGTTTTCTACACGACGGGCCTGCGAGGT 300
Query 301 GTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTG 360
Query 361 ATGTATAGAGAGAGAGACGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGTATAGAGAGAGAGATGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTG 420
Query 421 CTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCA 480
Query 481 GAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTACTACAAGGAATCTCA 540
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 481 GAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTGCTAGAAGGAATCTCG 540
Query 541 CAGGTTGATTCACCTTGCGAGTCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGC 600
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGGTTGATTCGCCTTGCGAATCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGC 600
Query 601 AATGGAAGCACAAGATTGCTTGCAGAGCATCACGATGAAGAGAGTAGTAATGATAATATG 660
||||| ||| ||| |||||||| ||| ||||||||||| |||| |||||||||||| ||
Sbjct 601 AATGGGAGCTCAAAATTGCTTGTAGATCATCACGATGAGGAGACAAGTAATGATAATTTG 660
Query 661 TGGACAAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGACGAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5