BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G06480.1

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg349912 jgi|Araly1|349912|fgenesh1_pg.C_scaffold_6000505           649    0.0  


> Ahg349912 jgi|Araly1|349912|fgenesh1_pg.C_scaffold_6000505
Length=462

 Score =  649 bits (351),  Expect = 0.0
 Identities = 428/465 (92%), Gaps = 6/465 (1%)
 Strand=Plus/Plus

Query  60   ATGTCGAGGATCTTCGCCATTCTTCCTCTCGCTGCTGTTTTTCTTCTCCTCCTTGTTTCA  119
            |||||||||||| ||||||||||| || || | ||| ||| |||||||||| ||||||||
Sbjct  1    ATGTCGAGGATCATCGCCATTCTT-CT-TCTC-GCTATTTCTCTTCTCCTCTTTGTTTCA  57

Query  120  CCGATTGT---AGCCATCGATGTCCATTACTGTGAAGAGAACGCAGAGTATGAAGTTAAA  176
            ||||||||   |||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct  58   CCGATTGTGCAAGCCATTGATGTCCATTACTGTGAAGAGAACGCAAAGTATGAAGTAAAA  117

Query  177  GTGAAAGAGGTTGATATATCTCCTAATCCTATAGCACCAGGCGAGCCAGCTACTTTCACC  236
            |||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||
Sbjct  118  GTGAAAGAGGTTGATATATCTCCTAACCCTATTGCCCCAGGCGAGCCAACTACTTTCACC  177

Query  237  ATCTCTGCCAACACAGGCCGTGAGATTTCGTTTGGGAAGCTGGTGATTGAAGTTTCATAC  296
            ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||
Sbjct  178  ATCTCTGCCAACACAGGCCATGAGATTTCGTTTGGTAAGCTCGTGATTGAAGTTTCGTAC  237

Query  297  TTTGGATGGCATGTTCACTCTGAGACTCATGACCTCTGCACTGAGACTAGTTGTCCTATA  356
            |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct  238  TTTGGATGGCATGTTCACTCGGAGACTCATGACCTCTGTACTGAGACTACTTGTCCTATA  297

Query  357  CAAACCGGAGATTTCTTGGTTGCACACTCTCAAGTTCTTCCTGGTTATACTCCTCCTGGT  416
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  298  CAAACTGGAGATTTCTTGGTTGCACACTCTCAAGTTCTTCCTGGTTATACTCCTCATGGT  357

Query  417  TCATACTTGCTGAAAATGAAGATGCTTGATGCAAAGAAGAAGGAGTTAACATGCATCAAA  476
             |||||| ||||||||||||||||||||||||  ||||||||||| |||||||||| |||
Sbjct  358  ACATACTCGCTGAAAATGAAGATGCTTGATGCGCAGAAGAAGGAGCTAACATGCATTAAA  417

Query  477  TTCTCGTTCGACATTGGACTCAGAGCATCTGTGGCTGACATTTAG  521
            ||| |||||||||||||||||||| |||| |||||||| ||||||
Sbjct  418  TTCGCGTTCGACATTGGACTCAGATCATCGGTGGCTGATATTTAG  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5