BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06490.1
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940090 jgi|Araly1|940090|scaffold_600634.1 959 0.0
> Ahg940090 jgi|Araly1|940090|scaffold_600634.1
Length=635
Score = 959 bits (519), Expect = 0.0
Identities = 569/594 (96%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 1 ATGAATGCGACGGTGGTGCCACCTTACTCCGGCCACTGGCTAACGAACACAGATAGGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGAATGCGACGGTGGTGCCACCTTACTCCGGCCACTGGCTAACGAACACAGATAGGATG 81
Query 61 GGTGGATTGGCTTACGGGATCGGAGTCTCCATTGGTATACTTATGCTAATTACCACAATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 GGTGGATTGGCTTACGGGATCGGAGTCTCCATTGGTATACTTATGCTAATTACCACAATC 141
Query 121 ACCCTAACTTCTTACTATTGCACTCGAAGCCATATCTCTGCCTCTCCCACGACCACTCCT 180
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 ACCCTCACTTCTTATTATTGCACTCGAAGCCATATCTCTGCCTCTCCCACGACCACTCCA 201
Query 181 AGGACAAGACGCCGGCAAAGAGAGAGCAATGGAACGTTACCACCTGGCCAAGAACGGTTC 240
|||||||||||||||| |||||||| |||||||||||||| |||||||||||| | ||||
Sbjct 202 AGGACAAGACGCCGGCGAAGAGAGACCAATGGAACGTTACAACCTGGCCAAGATCAGTTC 261
Query 241 GACTTCGAAGATGATGAAAGCGACACCGTTGTGGTCGAAGTCTTGGGGCTAACCGAGGAG 300
|||||||| | |||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct 262 GACTTCGACGGTGATGAAAACGACACCGTTGTGGTCGAAGTCATGGGGCTAAACGAGGAG 321
Query 301 GTGATCAAGGGTTTTCCTAAGCTCCCGTACGAAGAGGCTCGTGTGAGTTATAGCTTACAA 360
||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 322 GTGATCAAGAGTTTTCCTAAGCTTCCGTACGATGAGGCTCGTGTGAGTTATAGCTTGCAA 381
Query 361 AAGGAATCGAGTACGACGTCGTGTTGTTCTATATGTCTTGCGGATTACAAGAAAATGGAC 420
|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 382 AAGGAATCCAGTACGACGTCGTGTTGTTCTATATGTCTCGCGGATTACAAAAAAATGGAT 441
Query 421 ATGATCAGGGTTTTGCCCGATTGTAACCACTTGTTCCACGACAATTGCGTTGACCCTTGG 480
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 442 ATGATCAGGGTTTTGCCTGATTGTAACCACTTGTTCCACGACACTTGCGTTGACCCTTGG 501
Query 481 CTCAGGCTTCATCCTACTTGTCCCGTTTGCCGTACGTCTCCGTTACCATCACCGGCGATG 540
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CTGAGGCTTCATCCTACGTGTCCCGTTTGCCGTACGTCTCCGTTACCATCACCGGCGATG 561
Query 541 ACACCTGTCGCTGACGTTGTTCCCTTTTCCCGCCGGCCAATGATGGATATTTGA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 ACACCTGTCGCTGACGTTGTTCCCTTTTCCCGCCGGCCAATGATGGATATTTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21748685730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5