BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G06510.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940092 jgi|Araly1|940092|scaffold_600636.1 1341 0.0
> Ahg940092 jgi|Araly1|940092|scaffold_600636.1
Length=852
Score = 1341 bits (726), Expect = 0.0
Identities = 813/855 (95%), Gaps = 5/855 (1%)
Strand=Plus/Plus
Query 78 TTGGACTTTTGGAACATAAGCTATGCAAACTGAGGAGCTTTTGTCGCCACCACAGACTCC 137
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TTGGACTTTTGG-ACATAAGCTATGCAAACTGAGGAACTTTTGTCGCCACCACAGACTCC 59
Query 138 TTGGTGGAATGCTTTTGGATCTCAGCCGTTGACTACAGAGAGCCTTTCCGGCGAAGCTTC 197
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 60 TTGGTGGAATGCTTTTGGATCTCAGCAGTTGACTACAGAGAGCCTTTCCGGCGACGCTTC 119
Query 198 TGATTCATTCACCGGAGTTAAGGCAGTTACTACGGAGGCAGAACAAGGTGTGGTGGATAA 257
||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 120 TGATTCATTCACCGGAGTTAAGGCAGTTACTCCTGAGACAGAACAAGGTGTGGTGGATAA 179
Query 258 ACAAACTTCTACAACTCTCTTCACTTTCTCACCTGGTGGTGAAAAGAGTTCAAGAGATGT 317
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 180 ACAAAGTTCTACAACTCTCTTGACTTTCTCACCTGGTGGTGGAAAGAGTTCAAGAGATGT 239
Query 318 GCCAAAGCCTCATGTTGCTTTCGCGATGCAATCAGCTTGCTTCGAGTTTGGATTTGCTCA 377
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 GCCAAAGCCTCATGTTGCTTTCACGATGCAATCAGCTTGCTTCGAGTTTGGATTTGCTCA 299
Query 378 GCCAATGATGTACACAAAGCATCCTCATGTTGAACAATACTATGGAGTTGTTTCAGCATA 437
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 GCCAATGATCTACACAAAGCATCCTCATGTAGAACAATACTATGGAGTTGTTTCAGCCTA 359
Query 438 CGGATCTCAGAGGTCTTCGGGCCGAGTAATGATTCCACTGAAGATGGAGACAGAAGAAGA 497
|||||||||||||||||||| ||| ||||| | || || ||||||||||||||||||||
Sbjct 360 TGGATCTCAGAGGTCTTCGGGACGATTAATGCTGCCTCTAAAGATGGAGACAGAAGAAGA 419
Query 498 TGGTACCATCTATGTGAACTCAAAGCAGTACCATGGAATTATCAGGCGACGCCAGTCCCG 557
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGTACCATCTATGTGAACTCGAAGCAGTACCATGGAATTATCAGGCGACGCCAGTCCCG 479
Query 558 AGCAAAGGCTGAAAAACTGAGTAGATGCCGTAAGCCATATATGCATCACTCACGCCATCT 617
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AGCAAAGGCTGAAAAACTGAGTAGATGCCGTAAGCCATATATGCATCACTCGCGCCATCT 539
Query 618 CCATGCTATGCGCCGTCCTAGAGGATCTGGCGGGCGTTTCTTGAACACCAAGACAGCTGA 677
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 540 CCATGCTATGCGCCGTCCTAGAGGATCTGGTGGGCGTTTCTTGAACACCAAGGCAGCTGA 599
Query 678 TGCGGCTAAGCAGTCTAAGCCGAGTAATTCTCAGAGTTCTGAAGTCTTTCATCCGGAAAA 737
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGCGGCTAAGCAATCTAAGCCGAGCAATTCTCAGAGTTCTGAAGTCTTTCATCCGGAAAA 659
Query 738 TGAG-ACCATAAACTCATCGAGGGAAGCAAATGAGTCAAATCTCTCGGATTCTGCAGTTA 796
|| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 660 C-AGGACCATAAACTCATCGAGGGAAGCAAACGGGTCAAATCTCTCGGATTCTACAGTTA 718
Query 797 CAAGTATGGATTACTTTCTAAGTTCGTCGG-CTTATTCTCCTGGTGGCATGGTCATGCCT 855
||| ||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||
Sbjct 719 CAAATATGGATTACTTTCTAAGTTCATCGGTCT-ATTCTTCTGGTGGCATGGTCATGCCT 777
Query 856 ATCAAGTGGAATGCAGCAGCAATGGATATTGGCTGCTGCAAACTTAATATATGATCAGCA 915
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||
Sbjct 778 ATCAAGTGGAATGCAGCAGCAATGGATATTAGCTGCTGCAATCTTAATACATGATGAGCA 837
Query 916 GATAGGGGACAAGAC 930
|||||||||||||||
Sbjct 838 GATAGGGGACAAGAC 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5